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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-03-29 18:55:04, GGGenome : Marmoset genome, WUGSC 3.2/calJac3 (Mar, 2009)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

chr4:83483837-83483851
TGTCTCATTTGAAGTTTGTTTTTACTTGAA83483837TTCATTGACAACATTATACAATCTGAAAACTACATAAAACCTAAA
chr7:49423688-49423702
TCACTCACCAGGAGGCTGCTGAGAAAACAG49423688TTCATTGACAACATTGCCCATGAAGATGCCAACTCGAGTCTCATT
chr10:49868671-49868685
CAGAAATTTTGGAAATGCTACTGTTGCTTT49868671TTCATTGACAACATTAGCTGGGACTGTATTAAATATCAAATATAT
chr1:30386675-30386689
GTTGTCACCTCAGTGTGAGTTACCTCAGGC30386675AATGTTGTCAATGAATACAGCCTCCAGGGAGAAACTTCAGACTGC
chr2:17110386-17110400
CTTCTCAGGCAATTATTTGTTGAATGAACC17110386AATGTTGTCAATGAAGCTAATGTGCTGACTCAGGCCAGGCACCAC
chr2:158780935-158780949
AAAACTTGCATAGTTTGTTACACAGTTATT158780935AATGTTGTCAATGAAATAATAGCAATGTAAATTAAGAAGACTTAA
chr3:25538741-25538755
TGTAGTCAGCAAATAGTTAATTGCTGTTTA25538741AATGTTGTCAATGAAAAGGAGTATTACACAAAATCAGAGGATTTA
chr3:81071012-81071026
ATATGAAAATTCAATAAAAGTACATTACAA81071012AATGTTGTCAATGAAATTGTAATTATTTTTCAGACTATGACATTA
chr4:229545-229559
TTGGCTCACGTTTCTCTTTTGGGTGGTGTT229545AATGTTGTCAATGAAAAGAGTCAAACTCTGTAAAATATTTGAAAG
chr5:115809822-115809836
AAATGCTTCCAGCTTTTACCCATTCAGCAT115809822AATGTTGTCAATGAACCCATTGGATGGCTCTTATTTTGAGATATG
chr6:58621786-58621800
AAGTTCCAAAGTAAATTTGCATTATATGCT58621786AATGTTGTCAATGAATAGAATATAAATGTGCTACTTTGCTGCAAT
chr9:81809951-81809965
AACCCTCTCCTGTAGAATTTCTTTCCATGA81809951AATGTTGTCAATGAAAAAGAATGAAAAGTCATGTAGATTCATGTA
chr10:32711328-32711342
GAAAAAAAACCCAGAACTTTTAAAATGAAA32711328AATGTTGTCAATGAAACTAAAAATATCTTGGACAAGTTTAACATA
chr11:39368029-39368043
CACACAAAGCCATGCTTCCTGAATCCATAA39368029AATGTTGTCAATGAAATGGTTAAAATTGTTGTATATATTGTGTCC
chr13:13566825-13566839
TCTGAGACATGACACCTGGGTTTAGATCCT13566825AATGTTGTCAATGAACACAACTTCTTTGGTCATTCCCAATATATT
chr19:11468049-11468063
ATTCATGGTTTGTCACCTAGTTTTGTTGGA11468049AATGTTGTCAATGAATTTATTTTGCTATCCAGTTTCTCCGTATGC
chrX:105531811-105531825
TATGCCTTTCTCTTAATGTACAAGTAAATA105531811AATGTTGTCAATGAAATGGGAATTTTTATTGGGTTGGGGATTTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/calJac3/TTCATTGACAACATT
lang : ja | db : calJac3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.337 | 0.329 | search_plus_done; http://172.18.8.78:28041/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.342 | 0.005 | search_minus_done; http://172.18.8.78:28041/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=47
0.346 | 0.003 | cgi_end;

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