GGGenome | Results

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2025-04-09 02:18:51, GGGenome : Elephant shark genome, Callorhinchus_milii-6.1.3/calMil1 (Dec, 2013)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

KI635857:5289376-5289390

ATTGACTGATTTTTATCCGAAGAATCTCAG5289376TTCATTGACAACATTTTTTCATTGCCCTACAACTGCTGCCTTTCC

KI635882:2234941-2234955

AAAAGTGTAAGAGAACTTTTTGCATTTTGT2234941TTCATTGACAACATTTTTGCCTAAGAGGAAATGGTTCTGTTGCCC

KI635900:4486157-4486171

CTCAAACCATTCAGATCCGGTCTTAAGTGT4486157TTCATTGACAACATTGGAACAAAACCTTCATTTCAAAGCTGGCTG

KI636071:376475-376489

AACTGAACATCCGAAACCTCCACATGGTTA376475TTCATTGACAACATTCTGTTCCCGAGTGTGCCATCTTGGAGTCAG

KI636423:6933-6947

CATTTCCGTTTATTCTAATTGTTAGATTAT6933TTCATTGACAACATTCGCCAGTGATGTATGTCTCTGTGTGACTGA

KI635857:16229534-16229548

CCGGGGGTAATAATCCCTTAAAAAAATGAT16229534AATGTTGTCAATGAATCCACGACTGTTTGTGGGACGCTGCTGTGC

KI635916:676130-676144

TCGGAAGAGCTCCTCGGCTCACTTTTAATG676130AATGTTGTCAATGAAAAGAATTTTGTTATCGATCGGAACCAAGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Tab-delimited text: Open in new window | Download
You can copy-paste the result into spreadsheet softwares (e.g. Excel) or text editors.
CSV format: Open in new window | Download
You can open CSV files using spreadsheet softwares (e.g. Excel) or text editors.
BED format: Link | Download
GFF format: Link | Download
JSON format: Link | Download

Debug Info:

0.009 | 0.009 | search_start;
0.084 | 0.075 | search_plus_done; http://172.18.8.76:28074/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.089 | 0.005 | search_minus_done; http://172.18.8.76:28074/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=45
0.089 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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