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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2021-04-23 17:55:39, GGGenome : Guinea pig genome, Broad/cavPor3 (Feb, 2008)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

scaffold_2:4943338-4943352
AGTAAATTTTGCTAGCCACCTACATCAGTC4943338TTCATTGACAACATTGTACGAATTTGTGAGGACCTCTGGAAACAC
scaffold_9:16384707-16384721
TGTGAGAGACTTTAAAACATTGACTTGCAA16384707TTCATTGACAACATTTGTAAATCTTTGATTCAAATATTTTAACAT
scaffold_18:1453300-1453314
GTTTGATTCTAATTGATAAAAGTGTTACTC1453300TTCATTGACAACATTTTATGTTTTTTTTTAAATGGGTCAATACTC
scaffold_22:7279758-7279772
ACTTCCCTGCCTGTATGTGTTCCAGTGGTT7279758TTCATTGACAACATTGTAAAGGTTCTAATACTGTTTCAGCTCACT
scaffold_32:10374307-10374321
GGAGGCTCATCCCATCCCCAAAAAGAAAAA10374307TTCATTGACAACATTTTATTATCTTGAGTGTTGTGTACATTTGAT
scaffold_34:14204570-14204584
TTATTTTTTCATTCTAGATAACTTCTTTAG14204570TTCATTGACAACATTCCTTAAATTTGATAAGACATCCCCCTTTTC
scaffold_36:10453778-10453792
TATCAACTTGAGATTGCAGTTCACCAGCCT10453778TTCATTGACAACATTGTATTACTTTCTCCCCTGGCCCTCTTCTCT
scaffold_158:1547520-1547534
CTCTTTGAATCTCATCAGCCTCCACCATGA1547520TTCATTGACAACATTGTTTTTCCTTTTTTAGCTGAAGATAGAAGG
scaffold_1:9772507-9772521
GGGTAAAATTGAGATTCAGTAAATATTTAT9772507AATGTTGTCAATGAAATAATTTCCTTAAATGCTTGCCTTTGATTG
scaffold_5:14517407-14517421
CTTAGGAAAATGTTCTCCTGCTCCTCGCTA14517407AATGTTGTCAATGAAGTATCCTGTCATTGTCAATGAAGACTTTTT
scaffold_6:57850114-57850128
GTAAGAATGAATCTGAGACAATTTTGACAT57850114AATGTTGTCAATGAATAATTCAGTCATGACCTGGGCCCTGATTTT
scaffold_58:6436167-6436181
ATATTACATCACTTCTTCTTTTACTATGTA6436167AATGTTGTCAATGAACTTCATAGCATATGAGCATATTATTGTATG
scaffold_73:4628727-4628741
TGGCACCTACGCTAGAATCAAAATGTACAG4628727AATGTTGTCAATGAAGAAAATTCACAGACTTGATAGAAGTCTGAC
scaffold_126:2870624-2870638
ATCATTATGTTGACCACCATAGATTTATAT2870624AATGTTGTCAATGAAAATTGCTTTCCTTATTGACCTGTGTTGATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/cavPor3/TTCATTGACAACATT
lang : ja | db : cavPor3 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.081 | 0.074 | search_plus_done; http://172.18.8.78:28036/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.087 | 0.005 | search_minus_done; http://172.18.8.78:28036/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=42
0.088 | 0.001 | cgi_end;

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