GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2022-01-18 17:19:41, GGGenome : Sloth genome, Broad/choHof1 (Jul, 2008)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

scaffold_1272:31456-31470
TAGAATGTATTATCGCTTCAAACACAGATT31456TTCATTGACAACATTTTGTGGGCATCCATTTAATATTAATATTAA
scaffold_15314:12722-12736
GATCCTCAGCAGCTTTGGTGTAACATGCAC12722TTCATTGACAACATTTAAGGATTTAAACAAGCAGGGATGAAGAAA
scaffold_22307:6099-6113
TTCTGTGCCACATGTCCATGATCAGTGTTA6099TTCATTGACAACATTTTGTGGGGCTTAAGGTCCTTACTGTGGAGC
scaffold_41504:3619-3633
GTGCCACATGTCTGTGATCATTAAGTGTTG3619TTCATTGACAACATTTTGTGGGGCTTACGGTCCTTACTGTGGAGC
scaffold_416:33518-33532
GAACAGTGGAAACGAGCTATGGATTATTTA33518AATGTTGTCAATGAACTCAACTATATGACTCAGATTGTTATCATG
scaffold_35095:12013-12027
AGCAAAAGTTTCTAAATCTTGTGATTTTTA12013AATGTTGTCAATGAATTCAAATGTGAAGCTTTGTGAGGACTAAAT
scaffold_36905:9169-9183
ATTACAAACAGTAGATCAAACAAGGTTTTC9169AATGTTGTCAATGAATAGGAAGCTGATTTAGCTTCCATGTTATGT
scaffold_42978:6319-6333
ATGTGCCCTTCAGGTTTTCAATAAATTCTT6319AATGTTGTCAATGAAAATGTCACTGCTAAAAAGATTTAAATCCCA
scaffold_47959:10142-10156
TGTGTTCCCAAAGATGGGGAGGGAGTTTGG10142AATGTTGTCAATGAAGTTTAGTATTCACCTGATGTTTTTTGCCGT
scaffold_64055:403-417
TGCTTTGAAGAAGGGAAGAGGCTCAGAGAG403AATGTTGTCAATGAAGACAAACTCCTGATGGGTGGACATTGCATT
scaffold_66275:911-925
AAGAAGGTATAAAAACTAAATCTACAGATC911AATGTTGTCAATGAATATTAATTTATATAAAAGTTCTAAACAAAA
scaffold_133578:845-859
CTTGAAAATAATCTCAGTGATACACCTCTG845AATGTTGTCAATGAAAACAAGAATTAAATTCACTATAACAGAAAG
scaffold_138235:370-384
ACAGTTCTTTGATTTCCTTTCAATACTCCA370AATGTTGTCAATGAACTGATTTTTCACAAAACAGTCTTAATTATG
scaffold_147042:3868-3882
GAACAGTGGAAACGAGCTATGGATTATTTA3868AATGTTGTCAATGAACTCAACTATATGACTCAGATTGTTATCATG
scaffold_150445:1278-1292
TGTGTTCCCAAAGATGGGGAGGGAGTTTGG1278AATGTTGTCAATGAAGTTTAGTATTCACCTGATGTTTTTTGCCGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : http://gggenome.dbcls.jp/ja/choHof1/TTCATTGACAACATT
lang : ja | db : choHof1 | k : 0 | strand : | nogap : | query_string : TTCATTGACAACATT | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.77:28060/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.77:28060/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=46
0.090 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).