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データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2024-11-22 03:17:50, GGGenome : Chinese hamster genome, C_griseus_v1.0/criGri1 (Jul, 2013)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

KE377625:1168-1182
CAAGCTCCTATTTTAGTGTTCTTGCTGAAC1168AATGTTGTCAATGAATGTTGGTTTTGATATGTACCATATGCTAGA
KE380761:261991-262005
TGACATGGCTTAGTTGGAAGGTAATTTCAA261991AATGTTGTCAATGAATATCTGTTAATATACTCAGTTATTGAAGTA
KE381516:1178093-1178107
CTTTGCAGAAAAGATTTCCTAACAAAATGT1178093AATGTTGTCAATGAAACTCATCAAATAGGCCAGCATTAGATCATT
KE381979:285312-285326
AGCTATGATAAGAATTTAAAGTATACTCAC285312AATGTTGTCAATGAAATATAAGAATAGAATGAAAAAGTAGGAAAC
KE382227:2654641-2654655
TGCCAATATCTTGACTTTATTGCAACACTT2654641AATGTTGTCAATGAAAGAGGCTGTGACTATTGCACTATTAGCTTC
KE383757:1079972-1079986
GAGTGGTGTATATAGCTCCCATCTGATCCC1079972AATGTTGTCAATGAAGGAACAGCAGAAAAAATAACCATCTATAGT
KE380273:3073747-3073761
ACTCAATAAGAATGTATTGAATATCTATTA3073747TTCATTGACAACATTCTAGGAAGGAGATCTATAAGTCACTAGCAA
KE380942:363052-363066
GTTTAAAAACAACATCACCTATTTCTTGGT363052TTCATTGACAACATTGGTATTCCAAGGATTAATAATCTTTCTTGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/criGri1/AATGTTGTCAATGAA
lang : ja | db : criGri1 | k : 0 | strand : | nogap : | query_string : AATGTTGTCAATGAA | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.082 | 0.074 | search_plus_done; http://172.18.8.78:28027/match?q=AATGTTGTCAATGAA&k=0&no_gap=0&offset=0&limit=50
0.088 | 0.006 | search_minus_done; http://172.18.8.78:28027/match?q=TTCATTGACAACATT&k=0&no_gap=0&offset=0&limit=44
0.088 | 0.001 | cgi_end;

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