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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:39:01, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Salmo trutta genome assembly, chromosome: 30.
LR584432.1:6422670-6422689
GTGGGAAGTTTGTCCACATGTGCTGTTCCA6422670ACCCCCTGCCATATCATCTTCACTACTTGTGGGTGAAGTGTCCATTCCCC
Mdfrt3087J15_e11582.g1 Mdfrt Malus domestica cDNA 5' similar to gb|AAM21578.1|AF451280_1 SINA-like protein [Phaseolus vulgaris], mRNA sequence.
GO559974.1:373-392
TTCCGGTGGCTATCCCTAATGCTACGGGGC373ACCCCCTGCCATATCATCTTCCTCC
TSA: Pyrus x bretschneideri Unigene63702_XinShao mRNA sequence.
JR651299.1:312-331
TTCCGGTGGCTATCCCTAATGCTACGCGGC312ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:32782225-32782244
TTCCGGTGGCTATCCCTAATGCTACGGGGC32782225ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:33162262-33162281
TTCCGGTGGCTATCCCTAATGCTACGGGGC33162262ACCCCCTGCCATATCATCTTCCTCCCATTCCCTCCCACTTCTAGACTGTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:35251360-35251379
TTCCGGTGGCTATCCCTAATGCTACGGGGC35251360ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:33700809-33700828
TTCCGGTGGCTATCCCTAATGCTACGGGGC33700809ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:34714257-34714276
TTCCGGTGGCTATCCCTAATGCTACGGGGC34714257ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus domestica genome assembly, chromosome: 2.
OU696678.1:34852912-34852931
TTCCGGTGGCTATCCCTAATGCTACGTGGC34852912ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus domestica genome assembly, chromosome: 2.
OU744543.1:34845176-34845195
TTCCGGTGGCTATCCCTAATGCTACGGGGC34845176ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus domestica genome assembly, chromosome: 2.
OU744954.1:34657596-34657615
TTCCGGTGGCTATCCCTAATGCTACGGGGC34657596ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus domestica genome assembly, chromosome: 2.
OU744992.1:35267401-35267420
TTCCGGTGGCTATCCCTAATGCTACGGGGC35267401ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Malus domestica genome assembly, chromosome: 16.
OU745006.1:38024474-38024493
TTAACTGTTTAGAATATAACGATGCTTAAA38024474ACCCCCTGCCATATCATCTTTAAACATATCATCTTTAAACATATGATGAA
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:24988730-24988749
TTCCGGTGGCTATCCCTAATGCTACGTGGC24988730ACCCCCTGCCATATCATCTTCCTCCCATTCCCGCCCACTTCTAGACTGTA
Narthecium ossifragum genome assembly, chromosome: 3.
OY986965.1:21420017-21420036
TTCCTATGGCTGTCCCTGATGCTTCTGGGA21420017ACCCCCTGCCATATCATCTTACGCCCATTCCCTCCAACCTCGAGGCTGTA
Mdfrt3046l05.y1 Mdfrt Malus domestica cDNA clone Mdfrt3046l05 5' similar to TR:O81232 O81232 SEVEN IN ABSENTIA HOMOLOG, mRNA sequence.
CO756278.1:52-71
TACAGTCTAGAAGTGGGCGGGAATGGGAGG52AAGATGATATGGCAGGGGGTGCCCCGTAGCATTAGGGATAGCCACCGGAA
Mdfrt3091f20.y1 Mdfrt Malus domestica cDNA clone Mdfrt3091f20 5' similar to TR:O81232 O81232 SEVEN IN ABSENTIA HOMOLOG, mRNA sequence.
CV129208.1:104-123
TACAGTCTAGAAGTGGGCGGGAATGGGAGG104AAGATGATATGGCAGGGGGTGCCCCGTAGCATTAGGGATAGCCACCGGAA
Mdfrt3087j15.y1 Mdfrt Malus domestica cDNA clone Mdfrt3087j15 5' similar to TR:O81232 O81232 SEVEN IN ABSENTIA HOMOLOG, mRNA sequence.
CV130098.1:104-123
TACAGTCTAGAAGTGGGCGGGAATGGGAGG104AAGATGATATGGCAGGGGGTGCCCCGTAGCATTAGGGATAGCCACCGGAA
Mdfrfu3515A04.g1 Apple_EST_Mdfrfu Malus domestica cDNA 5' similar to dbj|BAC15488.1| similar to RING zinc finger protein [Oryza sativa (japonica cultivar-group)] dbj|BAC16053.2| similar to RING zinc f
GO537596.1:400-419
TACAGTCTAGAAGTGGGCGGGAATGGGAGG400AAGATGATATGGCAGGGGGTGCCCCGTAGCATTAGGGATAGCCACCGGAA
TSA: Pyrus pyrifolia mRNA, contig: contig_29781.
FX404088.1:9-28
ATGGGAGG9AAGATGATATGGCAGGGGGTGCCACGTAGCATTAGGGATAGCCACCGGAA
TSA: Pyrus communis mRNA, contig: lc24118.
FX632534.1:142-161
TACAGTCTAGAAGTGGGCGGGAATGGGAGG142AAGATGATATGGCAGGGGGTGCCACGTAGCATTAGGGATAGCCACCGGAA
Antiaris toxicaria isolate JCLG002 chromosome 10.
CP141162.1:21180598-21180617
TACAGTCTTGAAGTGGGTGGAAATGGGAGG21180598AAGATGATATGGCAGGGGGTTCCGAGAAGCATTAGAGACAGCCACCGAAA
Antiaris toxicaria isolate JCLG002 chromosome 10.
CP141175.1:20984067-20984086
TACAGTCTTGAAGTGGGTGGAAATGGGAGG20984067AAGATGATATGGCAGGGGGTTCCGAGAAGCATTAGAGACAGCCACCGAAA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:2951691-2951710
TACAGTCTAGAAGTGGGCGGGAATGGGAGG2951691AAGATGATATGGCAGGGGGTGCCCCGTAGCATTAGGGATAGCCACCGGAA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141928.1:2981913-2981932
TACAGTCTAGAAGTGGGCGGGAATGGGAGG2981913AAGATGATATGGCAGGGGGTGCCCCGTAGCATTAGGGATAGCCACCGGAA
Chamaenerion angustifolium genome assembly, chromosome: 7.
OX328271.1:5771501-5771520
TACAGCCTTGAGGTTGGAGGGAACGGAAGG5771501AAGATGATATGGCAGGGGGTGCCCCGAAGCATAAGGGACAGTCATAGGAA
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:3040325-3040344
TACAGTCTAGAAGTGGGCGGGAATGGGAGG3040325AAGATGATATGGCAGGGGGTGCCCCGTAGCATTAGGGATAGCCACCGGAA
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:3902268-3902287
TACAGCCTAGAAGTGGGCGGGAATGGGAGG3902268AAGATGATATGGCAGGGGGTGCCACGTAGCATTAGGGATAGCCACCGGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/%20ACCCCCTGCCATATCATCTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : %20ACCCCCTGCCATATCATCTT | format : html | download : | debug : 

0.010 | 0.010 | search_start;
0.223 | 0.213 | search_plus_done; http://172.18.8.135:50400/match?q=ACCCCCTGCCATATCATCTT&k=0&no_gap=0&offset=0&limit=50
0.439 | 0.216 | search_minus_done; http://172.18.8.135:50400/match?q=AAGATGATATGGCAGGGGGT&k=0&no_gap=0&offset=0&limit=35
0.448 | 0.009 | cgi_end;

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