GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 12:11:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

454GmaGlobSeed105403 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK370771.1:73-94
TTCATCTGAACCTCCGGCGCCATCTCCATC73GCAACATCATAACCCATTGTGCCATCTTCCACAGCAGCATTTACCATCGTAG
454GmaGlobSeed490095 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD747446.1:121-142
TTCATCTGAACCTCCGGCGCCATCTCCATC121GCAACATCATAACCCATTGTGCCATCTTCCACAGCAGCATTTACCATCGTAG
GM_WBa0091G14.r GM_WBa Glycine max genomic clone GM_WBa0091G14 3', genomic survey sequence.
ED664873.1:338-359
TTCATCTGAACCTCCGGCGCCATCTCCATC338GCAACATCATAACCCATTGTGCCATCTTCCACAGCAGCATTTACCATCGTAG
GSS_Ba127C21.R GSS_Ba Glycine soja genomic 3', genomic survey sequence.
HN084145.1:340-361
TTCATCTGAACCTCCGGCGCCATCTCCATC340GCAACATCATAACCCATTGTGCCATCTTCCACAGCAGCATTTACCATCGTAG
GD_TBa090D21.F GD_TBa Glycine dolichocarpa genomic 5', genomic survey sequence.
HN571028.1:107-128
TTCATCTGAACCTCCGGCGCCATCTCCGTC107GCAACATCATAACCCATTGTGCCATCTTCAACAGCAGCATTCAGCATCATAG
GS_Ba089F15.R GS_Ba Glycine syndetika genomic 3', genomic survey sequence.
HN873136.1:326-347
TTCATCTGAACCTCCGGCGCCATCTCCATC326GCAACATCATAACCCATTGTGCCATCTTCCACAGCAGTATTCAGCATCACAG
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:7281325-7281346
TTCATCTGAACCTCCGGCGCCATCTCCATC7281325GCAACATCATAACCCATTGTGCCATCTTCCACAGTAGCATTTAGCATCATAG
Sequence 12571 from patent US 9012723.
HK576225.1:1058-1079
CTATGATGCTAAATGCTACTGTGGAAGATG1058GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA
Sequence 62601 from patent US 9029636.
HK971664.1:1130-1151
CTACGATGGTAAATGCTGCTGTGGAAGATG1130GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA
Sequence 100490 from patent US 9029636.
HL009554.1:512-533
CTATGATGCTAAATGCTACTGTGGAAGATG512GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA
454GmaGlobSeed317132 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK582500.1:79-100
CTACGATGGTAAATGCTGCTGTGGAAGATG79GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA
454GmaGlobSeed412596 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD669947.1:113-134
CTACGATGGTAAATGCTGCTGTGGAAGATG113GCACAATGGGTTATGATGTTGCGATGGAGATGGCG
454GmaGlobSeed416955 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD674306.1:77-98
CTACGATGGTAAATGCTGCTGTGGAAGATG77GCACAATGGGTTATGATGTTGCGATGGAGATGGCG
454GmaGlobSeed421341 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD678692.1:77-98
CTACGATGGTAAATGCTGCTGTGGAAGATG77GCACAATGGGTTATGATGTTGCGATGGAGATGGCG
454GmaGlobSeed478662 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD736013.1:111-132
CTACGATGGTAAATGCTGCTGTGGAAGATG111GCACAATGGGTTATGATGTTGCGATGGAGATGGCG
454GmaGlobSeed544141 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD801492.1:77-98
CTACGATGGTAAATGCTGCTGTGGAAGATG77GCACAATGGGTTATGATGTTGCGATGGAGATGGCG
454GmaGlobSeed581215 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD838566.1:70-91
CTACGATGGTAAATGCTGCTGTGGAAGATG70GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA
454GmaGlobSeed620479 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD877830.1:82-103
CTACGATGGTAAATGCTGCTGTGGAAGATG82GCACAATGGGTTATGATGTTGCGATGGAGATGGCG
454GmaGlobSeed663586 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD920937.1:77-98
CTACGATGGTAAATGCTGCTGTGGAAGATG77GCACAATGGGTTATGATGTTGCGATGGAGATGGCG
454GmaGlobSeed686223 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
GD943574.1:78-99
CTACGATGGTAAATGCTGCTGTGGAAGATG78GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA
GM_WBb0029G03.r GM_WBb Glycine max genomic clone GM_WBb0029G03 3', genomic survey sequence.
ED691782.1:699-720
CTACGATGGTAAATGCTGCTGTGGAAGATG699GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA
Glycine max cultivar Williams 82 chromosome 19.
CP126444.1:13844494-13844515
CTACGATGGTAAATGCTGCTGTGGAAGATG13844494GCACAATGGGTTATGATGTTGCGATGGAGATGGCGCCGGAGGTTCAGATGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/%20GCAACATCATAACCCATTGTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : %20GCAACATCATAACCCATTGTGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.407 | 0.399 | search_plus_done; http://172.18.8.135:50400/match?q=GCAACATCATAACCCATTGTGC&k=0&no_gap=0&offset=0&limit=50
1.418 | 1.010 | search_minus_done; http://172.18.8.135:50400/match?q=GCACAATGGGTTATGATGTTGC&k=0&no_gap=0&offset=0&limit=43
1.427 | 0.010 | cgi_end;

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