GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 04:45:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

G1148P328RG7.T0 Anolis carolinensis pooled normalized testes cDNA library Anolis carolinensis cDNA, mRNA sequence.
FG789226.1:676-695
ATCAATTTTTCCCTTGCGGTACTATCAATA676AAAACTCTACGGCTAAGGGTTCGATCCGCCTCTACTTTTTTTTGTCAATG
BOMHS60TF BO_2_3_KB Brassica oleracea genomic clone BOMHS60, genomic survey sequence.
BH679637.1:69-88
GAACAGGAGCTCATGCTTGCTGATACAAAC69AAAACTCTACGGCTAAGGGTAATTACTTACGTTCTCATCATTCACAACAA
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:5054509-5054528
GAACAGGAGCGCATGCTTTCTGATACAAAC5054509AAAACTCTACGGCTAAGGGTAACTTCTTACGTTATCATCGTTCACAATAT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:56523296-56523315
AATCAGGAGCGCATGCTTTCGGATACAAAC56523296AAAACTCTACGGCTAAGGGTAGTTCCTTACGTTCTCATCGTTCACAACAA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:57071982-57072001
AATCAGGAGCGCATGCTTTCGGATACAAAC57071982AAAACTCTACGGCTAAGGGTAGTTCCTTACGTTCTCATCGTTCACAACAA
KBrB036G05R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB036G05, genomic survey sequence.
DX037534.1:68-87
ATATTGTGAACGATGATAACGTAAGAAGTT68ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
KBrB068L09R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB068L09, genomic survey sequence.
DX062000.1:68-87
ATATTGTGAACGATGATAACGTAAGAAGTT68ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
KBrB110O09F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB110O09, genomic survey sequence.
ED522885.1:85-104
ATATTGTGAACGATGATAACGTAAGAAGTT85ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
KBrB124E04R KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB124E04, genomic survey sequence.
ED532657.1:55-74
ATATTGTGAACGATGATAACGTAAGAAGTT55ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:18140015-18140034
TTGTTGTGAACGATGAGAACGTAAGGAACT18140015ACCCTTAGCCGTAGAGTTTTGTTTGTATCCGAAAGCATGCGCTCCTGATT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:21453152-21453171
ATATTGTGAACGATGATAACGTAAGAAGTT21453152ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Brassica rapa genome, scaffold: A08.
LR031575.1:20425973-20425992
ATATTGTGAACGATGATAACGTAAGAAGTT20425973ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:26164576-26164595
ATATTGTGAACGATGATAACGTAAGAAGTT26164576ACCCTTAGCCGTAGAGTTTTGTTTGTATCAGAAAGCATGCGCTCCTGTTC
Lepidium didymum genome assembly, chromosome: 3.
OY986993.1:18310243-18310262
ACAACACTAATTTTTGTTATTAAATTAATT18310243ACCCTTAGCCGTAGAGTTTTATTTGTCTCAGTCAGCATGCGTTCCTGTTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAAACTCTACGGCTAAGGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAAACTCTACGGCTAAGGGT | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.188 | 0.180 | search_plus_done; http://172.18.8.135:50400/match?q=AAAACTCTACGGCTAAGGGT&k=0&no_gap=0&offset=0&limit=50
0.293 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=ACCCTTAGCCGTAGAGTTTT&k=0&no_gap=0&offset=0&limit=45
0.299 | 0.006 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).