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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 03:31:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RS3BQ48JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EX907101.1:35-56
TTTTTTTTTTTTGGTTTTAGCAAATGCTAT35AAACGGTATGACCAACTCAGGATCCTAATTGAGAAACTCACATACAATGTAA
RR4EF93JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EY921068.1:41-62
TTTTTTTGCTTAAGTTTTAGCAAATGCTAT41AAACGGTATGACCAACTCAGGATCTTAATTTAGAAACTCACATACAATGTAA
RS2F686JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573920.1:51-72
AGTCGATGCTTAAGTTTTAGCAAATGCTAT51AAACGGTATGACCAACTCAGGATCCTAATTGAGAAACTCACATACAATGTAA
KBrH079N15R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH079N15, genomic survey sequence.
DU987220.1:303-324
TCACTGAGATTTAGTTTTAGCAAATGATAC303AAACGGTATGACCAACTCAGGATCTTAATTGAAAAACTCACATACAATGTAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH008A19, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189562.1:117494-117515
TCACTGAGATTTAGTTTTAGCAAATGATAC117494AAACGGTATGACCAACTCAGGATCTTAATTGAAAAACTCACATACAATGTAA
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 99 unordered pieces.
FJ789646.1:912663-912684
TCACTGAGATTTAGTTTTAGCAAATGATAC912663AAACGGTATGACCAACTCAGGATCTTAATTGAAAAACTCACATACAATGTAA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:11870137-11870158
GGTCAATGCTTAAGTTTTAGCAAATGCTAT11870137AAACGGTATGACCAACTCAGGATCTTAATTTAGAAACTCACATACAATGTAA
RR4EF93TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925628.1:775-796
TATTACATTGTATGTGAGTTTCTAATTAGA775TCCTGAGTTGGTCATACCGTTTA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1062.
FX667814.1:761-782
TTACATTGTATGTGAGTTTCTCAATTAGGA761TCCTGAGTTGGTCATACCGTTTATAGCATTTGCTAAAACTTAAGCATCGACT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_3644.
FX754661.1:770-791
TTACATTGTATGTGAGTTTCTAAATTAAGA770TCCTGAGTTGGTCATACCGTTTATAGCAAAAAAAA
Brassica rapa subsp. pekinensis clone KBrH079N15, WORKING DRAFT SEQUENCE.
FJ789642.1:158522-158543
TTACATTGTATGTGAGTTTTTCAATTAAGA158522TCCTGAGTTGGTCATACCGTTTGTATCATTTGCTAAAACTAAATCTCAGTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH011C10, complete sequence.
AC189575.2:7766-7787
TTACATTGTATGTGAGTTTTTCAATTAAGA7766TCCTGAGTTGGTCATACCGTTTGTATCATTTGCTAAAACTAAATCTCAGTGA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:21741250-21741271
TTACATTGTATGTGAGTTTTTCAATTAAGA21741250TCCTGAGTTGGTCATACCGTTTGTATCATTTGCTAAAACTAAATCTCAGTGT
Brassica rapa genome, scaffold: A07.
LR031574.1:20707827-20707848
TTACATTGTATGTGAGTTTTTCAATTAAGA20707827TCCTGAGTTGGTCATACCGTTTGTATCATTTGCTAAAACTAAATCTCAGTGT
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:21109243-21109264
TTACATTGTATGTGAGTTTCTAAATTAAGA21109243TCCTGAGTTGGTCATACCGTTTATAGCATTTGCTAAAACTTAAGCATTGACC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:20999057-20999078
TTACATTGTATGTGAGTTTTTCAATTAAGA20999057TCCTGAGTTGGTCATACCGTTTGTATCATTTGCTAAAACTAAATCTCAGTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AAACGGTATGACCAACTCAGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AAACGGTATGACCAACTCAGGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.286 | 0.278 | search_plus_done; http://172.18.8.135:50400/match?q=AAACGGTATGACCAACTCAGGA&k=0&no_gap=0&offset=0&limit=50
0.390 | 0.104 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTGAGTTGGTCATACCGTTT&k=0&no_gap=0&offset=0&limit=43
0.396 | 0.006 | cgi_end;

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