GGGenome | Results

2025-04-08 02:37:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

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RTDR2_2_B04.g1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone RTDR2_2_B04_A021 5', mRNA sequence.
CF388373.1:593-612

CCGAAGAGCATGGGTATGGAGATGCAGAAG593AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

RTDS2_8_E12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus taeda cDNA clone RTDS2_8_E12_A021 5', mRNA sequence.
CF394955.1:112-131

CCGAAGAGCATGGGTATGGAGATGCAGAAG112AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

RTWW2_19_A02.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_19_A02_A021 5', mRNA sequence.
CF473946.1:27-46

AGAGCATGGGTATGGAGATGCAGAAG27AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

RTCNT1_50_F11.g1_A029 Root control Pinus taeda cDNA clone RTCNT1_50_F11_A029 5', mRNA sequence.
CF670522.1:78-97

CTGAAGAGCATGGGTATGGAAATGCAGAAG78AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

FLD1_5_A05.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_5_A05_A029 3', mRNA sequence.
CO158151.1:438-457

CCGAAGAGCATGGGTATGGAGATGCAGAAG438AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

FLD1_11_D10.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_11_D10_A029 3', mRNA sequence.
CO159071.1:354-373

CCGAAGAGCATGGGTATGGAGATGCAGAAG354AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

FLD1_54_G03.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_54_G03_A029 5', mRNA sequence.
CO165481.1:254-273

CCGAAGAGCATGGGTATGGAGATGCAGAAG254AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

Pinus pinaster bud EST.
CT583529.1:548-567

CTGAAGAGCATGGGTATGGAGATGCAGAAG548AAGCTATAAAGCATGGTATGGATGAAATGAGTGCTGAATTTCTTGCCGCA

RTPQ1_1_A11.b2_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_1_A11_A032 3', mRNA sequence.
CX712199.1:500-519

CCGAAGAGCATGGGTATGGAGATGCAGAAG500AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCTGCA

RTNIT1_30_A06.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_30_A06_A029 3', mRNA sequence.
DR060777.1:354-373

CTGAAGAGCATGGGTATGGAAATGCAGAAG354AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

RTFEPL1_7_C05.g1_A029 Roots plus added iron Pinus taeda cDNA clone RTFEPL1_7_C05_A029 5', mRNA sequence.
DR078895.1:657-676

CCGAAGAGCATGGGTATGGAGATGCAGAAG657AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCG

STRR1_10_A04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_10_A04_A033 5', mRNA sequence.
DR093788.1:133-152

CCGAAGAGCATGGGTATGGAGATGCAGAAG133AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

RTCU1_16_H05.g1_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_16_H05_A029 5', mRNA sequence.
DR743589.1:392-411

CCGAAGAGCATGGGTATGGAGATGCAGAAG392AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

GQ02783.B3_C03 GQ099: Mixed spruce tissues Picea glauca cDNA clone GenomeQuebec_Id:GQ02783_C03 5', mRNA sequence.
DV995128.1:711-730

CTGAAGAGCATGGGTATGGAGATGCAGAAG711AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCNNN

GQ03209.B7_K04 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03209_K04 5', mRNA sequence.
EX365022.1:346-365

CTGAAGAGCATGGGTATGGAGATGCAGAAG346AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA

GQ03404.B7_I05 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03404_I05 5', mRNA sequence.
EX395294.1:81-100

CTGAAGAGCATGGGTATGGAGATGCAGAAG81AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA

GQ03417.B7_A24 GQ034 - Needles - Mid-season Picea glauca cDNA clone GQ03417_A24 5', mRNA sequence.
EX399900.1:689-708

CTGAAGAGCATGGGTATGGAGATGCAGAAG689AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA

GQ0133.B3.r_F03 GQ013 - Elongating ROOTS tips - sapplings Picea glauca cDNA clone GQ0133_F03 5', mRNA sequence.
GE477309.2:687-706

CTGAAGAGCATGGGTATGGAGATGCAGAAG687AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA

PCO0114.CR_K11 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0114_K11 3', mRNA sequence.
GT249813.1:501-520

CCGAAGAGCATGGGTATGGAGATGCAGAAG501AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

PCO0114.C21_K11 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0114_K11 5', mRNA sequence.
GT253202.1:535-554

CCGAAGAGCATGGGTATGGAGATGCAGAAG535AAGCTATAAAGCATGGTATGGATGAAATGAGTGCCGAATTTCTTGCCGCA

PBA018.C21_N24 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA018_N24 5', mRNA sequence.
GW744027.1:771-790

CTGAAGAGCATGGATATGGAGATGCAGAAG771AAGCTATAAAGCATGGTATGAATGCAATGAGTGCCGAGTTTCTTGCTGTA

Pinus sylvestris EST, clone WZ0APSBC1YB18FM1.
HE636498.1:428-447

CTGAAGAGCATGGGTATGGAGATGCAGAAG428AAGCTATAAAGCATGGTATGGATGAAATGAGTGCTGAATTTCTTGCCGCA

TSA: Larix kaempferi PEMC24039.Lakaproemb mRNA sequence.
JR154671.1:628-647

CTGAAGAGCATGGCTATGGAGATGCAGAGG628AAGCTATAAAGCATGGTATGGATGCAATGAGCGCCGAGTTTCTTACTGCA

Picea glauca clone GQ03817_K10 mRNA sequence.
BT117353.1:1897-1916

CTGAAGAGCATGGGTATGGAGATGCAGAAG1897AAGCTATAAAGCATGGTATGGATGCAATGAGTGCCGAGTTTCTTGCCGCA

FLD1_52_D07.g1_A029 Root flooded Pinus taeda cDNA clone FLD1_52_D07_A029 5', mRNA sequence.
CO165142.1:229-248

TGCGGCAAGAAATTCGGCACTCATTTCATC229CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCGG

FLD1_56_D06.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_56_D06_A029 3', mRNA sequence.
CO165662.1:742-761

TGCGGCAAGAAATTCGGCACTCATTTCATC742CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCGG

WS01019.B21_K18 SS-R-N-A-11 Picea sitchensis cDNA clone WS01019_K18 3', mRNA sequence.
CO223683.1:394-413

TGCGGCAAGAAACTCGGCACTCATTGCATC394CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

Pinus pinaster bud EST.
CT575576.1:373-392

TGCGGCAAGAAATTCAGCACTCATTTCATC373CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

WS02740.CR_I02 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02740_I02 3, mRNA sequence.
DR515408.1:375-394

TGCGGCAAGAAACTCGGCACTCATTGCATC375CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

WS0313.B21_K08 WS-MC-A-17 Picea glauca cDNA clone WS0313_K08 3, mRNA sequence.
DR546664.1:393-412

TGCGGCAAGAAACTCGGCACTCATTGCATC393CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

WS0324.B21_N19 WS-MC-N-A-20 Picea glauca cDNA clone WS0324_N19 3, mRNA sequence.
DR555084.1:394-413

TGCGGCAAGAAACTCGGCACTCATTGCATC394CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

GQ03209.SP6_K04 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03209_K04 3', mRNA sequence.
EX365384.1:381-400

TGCGGCAAAAAACTCGGCACTCATTGCATC381CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

GQ03322.SP6.r_B12 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ03322_B12 3', mRNA sequence.
GO363866.1:388-407

TGCGGCGAGAAACTCGGCACTCATTGCATC388CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

GQ03817.SP6.r_K10 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03817_K10 3', mRNA sequence.
GR223168.1:387-406

TGCGGCAAGAAACTCGGCACTCATTGCATC387CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

PBA018.CR_N24 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA018_N24 3', mRNA sequence.
GW744349.1:380-399

TACAGCAAGAAACTCGGCACTCATTGCATT380CATACCATGCTTTATAGCTTCTTCTGCATCTCCATATCCATGCTCTTCAG

Pinus sylvestris EST, clone WZ0APSBC1YB18NM1.
HE636499.1:357-376

TGCGGCAAGAAATTCAGCACTCATTTCATC357CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8144 anonymous locus CL221Contig2_04 genomic sequence.
FJ131873.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8153 anonymous locus CL221Contig2_04 genomic sequence.
FJ131874.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8148 anonymous locus CL221Contig2_04 genomic sequence.
FJ131875.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8145 anonymous locus CL221Contig2_04 genomic sequence.
FJ131876.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8154 anonymous locus CL221Contig2_04 genomic sequence.
FJ131877.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8149 anonymous locus CL221Contig2_04 genomic sequence.
FJ131878.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8151 anonymous locus CL221Contig2_04 genomic sequence.
FJ131879.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8147 anonymous locus CL221Contig2_04 genomic sequence.
FJ131880.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8160 anonymous locus CL221Contig2_04 genomic sequence.
FJ131881.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8152 anonymous locus CL221Contig2_04 genomic sequence.
FJ131882.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8159 anonymous locus CL221Contig2_04 genomic sequence.
FJ131883.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8157 anonymous locus CL221Contig2_04 genomic sequence.
FJ131884.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATCTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8146 anonymous locus CL221Contig2_04 genomic sequence.
FJ131885.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8161 anonymous locus CL221Contig2_04 genomic sequence.
FJ131886.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8156 anonymous locus CL221Contig2_04 genomic sequence.
FJ131887.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Pinus taeda isolate 8158 anonymous locus CL221Contig2_04 genomic sequence.
FJ131888.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8155 anonymous locus CL221Contig2_04 genomic sequence.
FJ131889.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCAG

Pinus taeda isolate 8150 anonymous locus CL221Contig2_04 genomic sequence.
FJ131890.1:14-33

CACTCATTTCATC14CATACCATGCTTTATAGCTTCTTCTGCATTTCCATACCCATGCTCTTCGG

Haliclystus octoradiatus genome assembly, chromosome: 5.
OU744450.1:10522718-10522737

ATTGACTGATACGTTAACATCTATTATAAC10522718CATACCATGCTTTATAGCTTATTCATTCTCATTAGCTAACGGTGAGTTAC

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Debug Info:

0.009 | 0.009 | search_start;
1.082 | 1.073 | search_plus_done; http://172.18.8.135:50400/match?q=AAGCTATAAAGCATGGTATG&k=0&no_gap=0&offset=0&limit=50
1.792 | 0.710 | search_minus_done; http://172.18.8.135:50400/match?q=CATACCATGCTTTATAGCTT&k=0&no_gap=0&offset=0&limit=26
1.813 | 0.021 | cgi_end;

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