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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:52:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR1B016TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV527608.1:298-319
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT298AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
RR4CR60TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX773441.1:297-318
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT297AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
RS3CF78TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX905065.1:271-292
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT271AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
RS1D134TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY929596.1:333-354
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT333AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
RS2EC86TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940963.1:298-319
CCCACGTCTCCTGCTTCAGTTTCGGCCGAT298AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
RS1FH30TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
FD563849.1:163-184
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT163AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
RR4G553TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD986983.1:298-319
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT298AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
Raphanus sativus mRNA, clone: RSCF06D22, 5' end sequence.
FY429391.1:228-249
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT228AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_14665.
FX664872.1:198-219
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT198AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10182.
FX746201.1:364-385
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT364AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTGCAAAGAGACTAGAGAAGA
Brassica rapa genome, scaffold: A07.
LR031574.1:4154830-4154851
TTTTCCTCTCCTGCTTCAGTTTCAGCTGAT4154830AATGAAGTCGACAAGGCGAAACTCGCTCAGGTGAACGTTTCTTGAAAGTGAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:26276689-26276710
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT26276689AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTCTTTTTTTTTGACACAGTT
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:4161085-4161106
TTTTCCTCTCCTGCTTCAGTTTCAGCTGAT4161085AATGAAGTCGACAAGGCGAAACTCGCTCAGGTGAACGTTTCTTGAAAGTGAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:26276689-26276710
CCCACGTCTCCTGCTTCAGTTTCGGCTGAT26276689AATGAAGTCGACAAGGCGAAACTCGCTCAGGTTCTTTTTTTTTGACACAGTT
RS3CF78JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EX908847.1:739-760
TCTTCTCTAGTCTCTTTGCAACCTGAGCGA739GTTTCGCCTTGTCGACTTCATTATCAGCCGAAACTGAAGCAGAGACGTGGGA
RS1D134JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY925985.1:697-718
TCTTCTCTAGTCTCTTTGCAACCTGAGCGA697GTTTCGCCTTGTCGACTTCATTATCAGCCGAAACTGAA
RR4G553JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
FD983119.1:702-723
TCTTCTCTAGTCTCTTTGCAACCTGAGCGA702GTTTCGCCTTGTCGACTTCATTATCAGCCGAAACTGAAGCAGGAGAC
TSA: Raphanus sativus RS16031 mRNA sequence.
JT800578.1:696-717
TCTTCTCTAGTCTCTTTGCAACCTGAGCGA696GTTTCGCCTTGTCGACTTCATTATCAGCCGAAACTGAAGCAGGAGACGTGGG
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:32440220-32440241
ATCACTTTCAAGAAACGTTCACCTGAGCGA32440220GTTTCGCCTTGTCGACTTCATTATCAGCTGAAACTGAAGCAGGAGAGGAAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AATGAAGTCGACAAGGCGAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AATGAAGTCGACAAGGCGAAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.663 | 0.654 | search_plus_done; http://172.18.8.135:50400/match?q=AATGAAGTCGACAAGGCGAAAC&k=0&no_gap=0&offset=0&limit=50
0.916 | 0.253 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTCGCCTTGTCGACTTCATT&k=0&no_gap=0&offset=0&limit=36
0.919 | 0.003 | cgi_end;

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