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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 07:41:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BR057266 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-005D05 5', mRNA sequence.
EX072622.1:376-396
GATTGAGATGTACAAGAAAAAACTCGGTTT376ACATGGAGCTGATGATCCGTGCTGCAGCGGCATGTGTGATCAATGAAGAGT
BR058000 root cDNA library KBRT Brassica rapa subsp. pekinensis cDNA clone KBRT-014F12 5', mRNA sequence.
EX073356.1:120-140
GATTGAGATGTACAAGAAAAAACTCGGTTT120ACATGGAGCTGATGATCCGTGCTGCAGCGGCATGTGTGATCAATGAAGAGT
Brassica rapa subsp. pekinensis male sterility linked AFLP marker P01SCR01 genomic sequence.
FJ851467.1:235-255
GATTGAGATGTACAAGAAAAAACTCGGTTT235ACATGGAGCTGATGATCCGTG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_22000.
FX695607.1:384-404
ACTCTTCATTGATCACACATGCCGCTGCAG384CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_9489.
FX731655.1:418-438
ACTCTTCATTGATCACACATGCCGCTGCAG418CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:14473802-14473822
ACTCTTCATTGATCACACATGCCGCTGCAG14473802CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica napus genome assembly, chromosome: A04.
HG994358.1:8895771-8895791
ACTCTTCATTGATCACACATGCCGCTGCAG8895771CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica rapa genome, scaffold: A04.
LR031576.1:8153638-8153658
ACTCTTCATTGATCACACATGCCGCTGCAG8153638CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:8399312-8399332
ACTCTTCATTGATCACACATGCCGCTGCAG8399312CACGGATCATCAGCTCCATGTAAACCGAGTTTTTTCTTGTACATCTCAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACATGGAGCTGATGATCCGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACATGGAGCTGATGATCCGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.423 | 0.415 | search_plus_done; http://172.18.8.135:50400/match?q=ACATGGAGCTGATGATCCGTG&k=0&no_gap=0&offset=0&limit=50
0.539 | 0.116 | search_minus_done; http://172.18.8.135:50400/match?q=CACGGATCATCAGCTCCATGT&k=0&no_gap=0&offset=0&limit=47
0.543 | 0.004 | cgi_end;

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