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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 03:26:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys torridus genome assembly, chromosome: 7.
LR877194.1:63628272-63628290
GGAATTATTCAATTTTATGAACCTATGGGG63628272ACCATTCTCATTCATCCCACCACAAGCAGTAAGTTCCTTTAACTGCTGA
Onychomys arenicola genome assembly, chromosome: 7.
OX460353.1:64949414-64949432
GGAATTATTCAATTTTATGAACCTATGGGG64949414ACCATTCTCATTCATCCCACCACAAGCAGTAAGTTCCTTTAACTGCTGA
Onychomys leucogaster genome assembly, chromosome: 7.
OX460377.1:64917325-64917343
GGAATTATTCAATTTTATGAACCTATGGGG64917325ACCATTCTCATTCATCCCACCACAAGCAGTAAGTTCCTTTAACTGCTGA
Onychomys leucogaster genome assembly, chromosome: 7.
OX460424.1:63416073-63416091
GGAATTATTCAATTTTATGAACCTATGGGG63416073ACCATTCTCATTCATCCCACCACAAGCAGTAAGTTCCTTTAACTGCTGA
Onychomys arenicola genome assembly, chromosome: 7.
OX460448.1:65979910-65979928
GGAATTATTCAATTTTATGAACCTATGGGG65979910ACCATTCTCATTCATCCCACCACAAGCAGTAAGTTCCTTTAACTGCTGA
Onychomys torridus genome assembly, chromosome: 7.
OX460888.1:63628272-63628290
GGAATTATTCAATTTTATGAACCTATGGGG63628272ACCATTCTCATTCATCCCACCACAAGCAGTAAGTTCCTTTAACTGCTGA
Sylvilagus floridanus genome assembly, chromosome: 23.
OX463245.1:24172399-24172417
CAAAAGCAAGTTTCTTCCCTACACCACCCT24172399ACCATTCTCATTCATCCCAACAGAGTTGTGACATAGACCAGATGTCATT
Scophthalmus maximus chromosome 6.
CP026248.1:17498806-17498824
TGCGCTCCACAGCCTCCCTATTGTCTTCCA17498806ACCATTCTCATTCATCCCATTGCTTCACAAACCTTGTGACTCGGTGCAC
Trachurus trachurus genome assembly, chromosome: 5.
LR991633.1:9258774-9258792
CCCCTTCATCAGCCTCACTATTGTGTTCCC9258774ACCATTCTCATTCATCCCAAACTTGCCCCCACCTTTGCCCCCACAAGCC
Theobroma cacao, mRNA sequence (KZ0AAB7YO09FM1).
CU585911.1:229-247
GAATTATACTGTACATAGTACAGCATTGGA229ACCATTCTCATTCATCCCAAAACATGGGCTAATCAAACCTGTAATGCCG
Theobroma cacao, mRNA sequence (KZ0AAM7YO16FM1).
CU609126.1:214-232
GAATTAAACTGGACATAGTACAGCATTGGA214ACCATTCTCATTCATCCCAAAACATGGGCTAATCCAACCTGGAATGGCG
Capsicum annuum Takanotsume DNA, chromosome 8, sequence.
AP026703.1:67799224-67799242
TAGGGAAAACCATAATCCCCTCATTTATTC67799224ACCATTCTCATTCATCCCACAAGTTCAAAACCATAACTAAAGCATGAAT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:59326810-59326828
GGGGAATCCATTGTACCCCTATATACATTC59326810ACCATTCTCATTCATCCCAATGAGTGTAAAAACCAATAATTCATACATA
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 8.
CP124724.1:80903066-80903084
TAGGGAAAACCATAATCCCCTCATTTATTC80903066ACCATTCTCATTCATCCCACAAGTTCAAAACCATAACTAAAGCATGAAT
Theobroma cacao isolate Sca6 chromosome 1.
CP139290.1:3610199-3610217
GAATTATACTGTACATAGTACAGCATTGGA3610199ACCATTCTCATTCATCCCAAAACATGGGCTAATCAAACCTGTAATGCCG
Brassica napus genome assembly, chromosome: C01.
HG994365.1:41907349-41907367
GTAGAAGATTTGTTGTGTTGCCTTCACAAC41907349ACCATTCTCATTCATCCCACTAGTTTTATGTCTTGTTGCAGCCTCATAG
Brassica oleracea HDEM genome, scaffold: C1.
LR031878.1:41300177-41300195
GTAGAAGATTTGATGTGCTGCCTTCACAAC41300177ACCATTCTCATTCATCCCACTAGTTTTATGTCTTGTTGCAGCCTCATAG
Theobroma cacao genome assembly, chromosome: I.
LT594788.1:3624891-3624909
GAATTATACTGTACATAGTACAGCATTGGA3624891ACCATTCTCATTCATCCCAAAACATGGGCTAATCAAACCTGTAATGCCG
Avena insularis genome assembly, chromosome: 7C.
OU342344.1:157969733-157969751
TTGATCTTCATCAACCACCACTGCATCACC157969733ACCATTCTCATTCATCCCATCTACATCTTGTCTAGATCTTGTTTTAATT
Avena sativa genome assembly, chromosome: 7C.
OU342391.1:159142306-159142324
TCGATCTTCATCAACCACCACTGCATCACC159142306ACCATTCTCATTCATCCCATCTACATCTTGTCTAGATCTTGTTTTAATT
Avena eriantha genome assembly, chromosome: 3C.
OU342742.1:480545017-480545035
TCAATCTTCATCAACCACCGCTGTGTCACC480545017ACCATTCTCATTCATCCCATCTACAAATTCTCTAGATATTGTTATAATT
Avena sativa genome assembly, chromosome: 14.
OV702292.1:172071459-172071477
TCGATCTTCATCAACCACCACTGCATCACC172071459ACCATTCTCATTCATCCCATCTACATCTTGTCTAGATCTTGTTTTAATT
Theobroma cacao genome assembly, chromosome: 1.
OY284438.1:3670787-3670805
GAATTATACTGTACATAGTACAGCATTGGA3670787ACCATTCTCATTCATCCCAAAACATGGGCTAATCAAACCTGTAATGCCG
Theobroma cacao genome assembly, chromosome: 1.
OY284448.1:3671106-3671124
GAATTATACTGTACATAGTACAGCATTGGA3671106ACCATTCTCATTCATCCCAAAACATGGGCTAATCAAACCTGTAATGCCG
Spilarctia lutea genome assembly, chromosome: 3.
OU696473.1:22232967-22232985
TGGGTTCAGGAATTCAGAAAATGGAGTATC22232967ACCATTCTCATTCATCCCATGAGTGTCGTAATAGGGGACTAAAGGAGGG
Pyrrhosoma nymphula genome assembly, chromosome: 6.
OY754333.1:82828570-82828588
CTTGTCAATAATGATTCAAACTCAATTTCT82828570ACCATTCTCATTCATCCCACTGTATAGGAGTTTGTACCCTTCCACCAGC
Scomber scombrus genome assembly, chromosome: 3.
OY829920.1:12119473-12119491
GGAGGGTGGGGTGGGGGTGGTGGGGTAGTT12119473TGGGATGAATGAGAATGGTGAGAACACAATAGTGAGGCTATGAAGCGCA
Scophthalmus maximus genome assembly, chromosome: 5.
OY978256.1:10249806-10249824
GTGCACCGAGTCACAAGGTTTGTGAAGCAA10249806TGGGATGAATGAGAATGGTTGGAAGACAATAGGGAGGCTGTGGAGCGCA
oeh61e04.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ036251.1:556-574
CTATGAGGCTGCAACAAGACATAAAACTAG556TGGGATGAATGAGAATGGTGTTGTGAAGGCAACACAACAAATCTTCTAC
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:218356244-218356262
TATGTATGAATTATTGGTTTTTACACTCAT218356244TGGGATGAATGAGAATGGTGAATGTCTATAGGGGTACAATGGATTCCCC
Avena insularis genome assembly, chromosome: 4C.
OU342341.1:564869402-564869420
AATTCCAACAAGATCTAGACAAGATGTACA564869402TGGGATGAATGAGAATGGTGGTGATGCAGCGGTGGTTGATGAAGATCGA
Avena insularis genome assembly, chromosome: 4C.
OU342341.1:564878214-564878232
AATTACAACAAGATCTAGACAATATGTAGA564878214TGGGATGAATGAGAATGGTGGTGATGCAGTGGTGGTTGATGAAGATTGA
Avena sativa genome assembly, chromosome: 4C.
OU342388.1:615791745-615791763
AATTCCAACAAGATCTAGACAAGATGTACA615791745TGGGATGAATGAGAATGGTGGTGATGCAGCGGTGGTTGATGAAGATCGA
Avena sativa genome assembly, chromosome: 4C.
OU342388.1:615800371-615800389
AATTACAACAAGATCTAGACAATATGTAGA615800371TGGGATGAATGAGAATGGTGGTGATGCAGTGGTGGTTGATGAAGATTGA
Avena eriantha genome assembly, chromosome: 7C.
OU342746.1:130458100-130458118
AATTACAACAAGAGCTAGACAAGATGGAGA130458100TGGGATGAATGAGAATGGTGGTGATGCAGTGGTGGTTGATGAAGATCGA
Avena sativa genome assembly, chromosome: 11.
OV702289.1:659047187-659047205
AATTCCAACAAGATCTAGACAAGATGTACA659047187TGGGATGAATGAGAATGGTGGTGATGCAGCGGTGGTTGATGAAGATCGA
Avena sativa genome assembly, chromosome: 11.
OV702289.1:659055813-659055831
AATTACAACAAGATCTAGACAATATGTAGA659055813TGGGATGAATGAGAATGGTGGTGATGCAGTGGTGGTTGATGAAGATTGA
Theobroma cacao genome assembly, chromosome: 1.
OY284458.1:35572288-35572306
CGGCATTACAGGTTTGATTAGCCCATGTTT35572288TGGGATGAATGAGAATGGTTCCAATGCTGTACTATGTACAGTATAATTC
Berberis vulgaris genome assembly, chromosome: 10.
OY747133.1:36641139-36641157
TATGCATATGAGTTTTTTATTTTGTGATAA36641139TGGGATGAATGAGAATGGTTTAGTGAGAATAGGTTAACCCTGGTTCATT
4_Tbi_b3v08.
OD565227.1:64245-64263
ATGGTGTGTGTTAGGAAGGTGTGCTGATAA64245TGGGATGAATGAGAATGGTAATGAGTTAGTGAGTACGTGTTTATAAAAA
Sphinx pinastri genome assembly, chromosome: 5.
OX387619.1:19108205-19108223
TTATTGCTGTTTGGATTGAGAAAATTGATA19108205TGGGATGAATGAGAATGGTGGGGATTATTTATTTCAAAGCTGTATATGG
Conomelus anceps genome assembly, chromosome: 1.
OX418216.1:94864447-94864465
AGAGAGTATGGTACGGTATGGTAGGCTGTT94864447TGGGATGAATGAGAATGGTCTGCATGGGCTTGAGCCTGTCATGGGCGCC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ACCATTCTCATTCATCCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ACCATTCTCATTCATCCCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.201 | 0.193 | search_plus_done; http://172.18.8.135:50400/match?q=ACCATTCTCATTCATCCCA&k=0&no_gap=0&offset=0&limit=50
0.266 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=TGGGATGAATGAGAATGGT&k=0&no_gap=0&offset=0&limit=24
0.276 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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