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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:47:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Martes martes genome assembly, chromosome: 2.
OY734064.1:3610491-3610510
GGACACACAAAGAGGGCATATTCAGGAGCT3610491AGAAAGGGGGTGTGTGAGTGACTGGTTATGAAGACTGAGATCCGTTTGCG
Mastacembelus armatus genome assembly, chromosome: 20.
LR535852.1:4989724-4989743
GGAGAGAAAAGCAAAGAGAGATTTGGAAGG4989724AGAAAGGGGGTGTGTGAGTGTGATGACAGGTCATGCAGAAGTGGAGTAGG
Gymnoscopelus braueri genome assembly, chromosome: 17.
OY725524.1:6341970-6341989
TGCATGTGACTGTGTGTGCGGCTGCAACTT6341970AGAAAGGGGGTGTGTGAGTGAGGAACAGCCTGCGCTGCGCAGCGCATCAA
Gymnoscopelus microlampas genome assembly, chromosome: 17.
OY732719.1:3079381-3079400
TGTGTGTGTGTGCGCACGCGGCTGCAACTT3079381AGAAAGGGGGTGTGTGAGTGAAGAACAGCATGCGCTGCACTGCGCATCAT
Gymnoscopelus microlampas genome assembly, chromosome: 22.
OY732724.1:46542590-46542609
TGTGTGTGTGTGCGCACGCGGCTGCAACTT46542590AGAAAGGGGGTGTGTGAGTGAGGAACAGCATGCGCTGCCTGCGCTCAGTG
Eutrigla gurnardus genome assembly, chromosome: 4.
OY741267.1:25275078-25275097
AAAAACAGATTGTGACAGATAGACAAACAG25275078AGAAAGGGGGTGTGTGAGTGTAAAACCAATAAAAAGAGGTGTACTACTGC
Raphanus sativus mRNA, clone: RSCS01H05, 5' end sequence.
FY446359.1:463-482
CATTTTCTTAACATATAATACCAAATGTTT463AGAAAGGGGGTGTGTGAGTGTGATGTGTGTGTCTTTAAAAAAATCAAACG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_19692.
FX772713.1:555-574
CATCTCCTTAACATATAATACCAAATGTTT555AGAAAGGGGGTGTGTGAGTGTGGTGTGTGTGTCTTTTAAAAAAAATCGAA
Rattus norvegicus clone CH230-115K18, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC135830.3:120683-120702
ATGAGCTGAAAGGTGTCTTCTGCCCTGAAG120683AGAAAGGGGGTGTGTGAGTGAAGGCAGCAGAAGCATGTGATTTAGGGGAT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:52698043-52698062
CATCTCCTTAACATATAATACCAAATGTTT52698043AGAAAGGGGGTGTGTGAGTGTGGTGTGTGTGTCTTTTAAAAAAAATCGAA
Avena insularis genome assembly, chromosome: 7D.
OU342351.1:421968211-421968230
GGGTCGGGGTCAGGGGCGCGGGGTAGGGAA421968211AGAAAGGGGGTGTGTGAGTGTGTCTTGGGTGACCCGGGGTGGGCCGCGGG
Avena sativa genome assembly, chromosome: 21.
OV702299.1:405072018-405072037
GGGTCGAGGTCAGGGGCACGGGGTAGGGAA405072018AGAAAGGGGGTGTGTGAGTGTGTCTTGGGTGACCCGGGGTGGGCCGCAGG
Euphrasia confusa genome assembly, chromosome: 7.
OX940955.1:27152316-27152335
GGATTTGTGTGTTTGTGTTGTGTGTGTGAG27152316AGAAAGGGGGTGTGTGAGTGTTTATTTATAGGTGATAAAATGAAAAGAAT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:52698043-52698062
CATCTCCTTAACATATAATACCAAATGTTT52698043AGAAAGGGGGTGTGTGAGTGTGGTGTGTGTGTCTTTTAAAAAAAATCGAA
Anthophora plumipes genome assembly, chromosome: 15.
OX638125.1:11956048-11956067
AGAGAAATTCCAGCGAGTAAATTTCACCTC11956048AGAAAGGGGGTGTGTGAGTGTTCTGCCCCCGACTGGTCGCGCCAATGGCG
Gymnoscopelus microlampas genome assembly, chromosome: 6.
OY732708.1:1443209-1443228
TTGATGCGCAGCGCAGTGCATGCTGTTCCT1443209CACTCACACACCCCCTTTCTAAGTCGCAGCCGCACACACACACACACACA
Gymnoscopelus microlampas genome assembly, chromosome: 12.
OY732714.1:37972840-37972859
ATGCGCAGCGCAGCGCATGCTGCTGTTCCT37972840CACTCACACACCCCCTTTCTAAGTTGCAGCCGCGTGCGCACACACACACA
Sprattus sprattus genome assembly, chromosome: 1.
OY735285.1:66404752-66404771
AACTGCTGCCATTTACACATCACACAGCGC66404752CACTCACACACCCCCTTTCTCATCCCACAGGCAACTCGCGGTAAGGCTAC
RS1BW43JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX891765.1:154-173
TTCGATTTTTTTTAAAAGACACACACATCA154CACTCACACACCCCCTTTCTAAACATTTGGTATTATATGTCAAGGAGATG
RS1DM81JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EY927443.1:216-235
TTCGAATTTTTTTAAAAGACACACACATCA216CACTCACACACCCCCTTTCTAAACATTTGGTCTTATATGTTAAGGAGATG
RR3ES47JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD545273.1:172-191
TTCGGATTTTTTTTAAAGACACACACATCA172CACTCACACACCCCCTTTCTAAACATTTGGTATTATATGTTAAGGAGATG
RS3F496JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
FD582846.1:113-132
TTCGAATTTTTTTAAAAGACACACACATCA113CACTCACACACCCCCTTTCTAAACATTTGGTATTATATGTTAAGGAGATG
Rattus norvegicus clone CH230-486D20, WORKING DRAFT SEQUENCE, 2 unordered pieces.
AC127074.3:16327-16346
ATCCCCTAAATCACATGCTTCTGCTGCCTT16327CACTCACACACCCCCTTTCTCTTCAGGGCAGAAGACACCTTTCAGCTCAT
Rattus norvegicus clone CH230-235M21, WORKING DRAFT SEQUENCE.
AC132181.4:124646-124665
ATCCCCTAAATCACATGCTTCTGCTGCCTT124646CACTCACACACCCCCTTTCTCTTCAGGGCAGAAGACACCTTTCAGCTCAT
Raphanus sativus cultivar WK10039 clone RsH050N05, *** SEQUENCING IN PROGRESS ***, 6 ordered pieces.
AC255318.1:103548-103567
TTCGATTTTTTTTAAAAGACACACACACCA103548CACTCACACACCCCCTTTCTAAACATTTGGTATTATATGTTAAGGAGATG
Triticum aestivum genome assembly, chromosome: 2B.
LR862512.1:91743767-91743786
TATACGCACACACACTGAATCCAATGAATG91743767CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR862533.1:89613320-89613339
TATACGCACACACACTGAATCCAATGAATG89613320CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR862554.1:92345136-92345155
TATACGCACACACACTGAATCCAATGAATG92345136CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR865462.1:92148281-92148300
TATACGCACACACACTGAATCCAATGAATG92148281CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR865483.1:90548889-90548908
TATACGCACACACACTGAATCCAATGAATG90548889CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR865504.1:89266483-89266502
TATACGCACACACACTGAATCCAATGAATG89266483CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR865743.1:91852708-91852727
TATACGCACACACACTGAATCCAATGAATG91852708CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR865764.1:91194689-91194708
TATACGCACACACACTAAATCCAATGAATG91194689CACTCACACACCCCCTTTCTCTATGAGCAGCTTCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR877313.1:85328895-85328914
TATACGCACACACACTGAATCCAATGAATG85328895CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LR878439.1:89435550-89435569
TATACGCACACACACTGAATCCAATGAATG89435550CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
LS992084.1:86539998-86540017
TATACGCACACACACTGAATCCAATGAATG86539998CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum turgidum subsp. durum genome assembly, chromosome: 2B.
LT934114.1:87211315-87211334
TATACGCACACACACTGAATCCAATGAATG87211315CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
OU015725.1:96050258-96050277
TATACGCACACACACTGAATCCAATGAATG96050258CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
OU343177.1:106113534-106113553
TATACGCACACACACTGAATCCAATGAATG106113534CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
OU963876.1:90777462-90777481
TATACGCACACACACTGAATCCAATGAATG90777462CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
OV100741.1:94545859-94545878
TATACGCACACACACTGAATCCAATGAATG94545859CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
OW530314.1:94545859-94545878
TATACGCACACACACTGAATCCAATGAATG94545859CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Triticum aestivum genome assembly, chromosome: 2B.
OX637229.1:72413311-72413330
TATACGCACACACACTGAATCCAATGAATG72413311CACTCACACACCCCCTTTCTCTATGAGCAGCTCCGAGATACTGAGCCGGC
Euphrasia confusa genome assembly, chromosome: 1.
OX940949.1:66380811-66380830
ATTCTTTTCATTTTATCACCTATAAATAAA66380811CACTCACACACCCCCTTTCTCTCAGACACACAACACAAACACACAAATCC
Epirrhoe tristata genome assembly, chromosome: 19.
OX596155.1:8017237-8017256
TTTTCATTTCTCAATGAACGAAACATCGGT8017237CACTCACACACCCCCTTTCTAGGAACATGTGTTGTGATTTTAAAGAGCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGAAAGGGGGTGTGTGAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGAAAGGGGGTGTGTGAGTG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.209 | 0.200 | search_plus_done; http://172.18.8.135:50400/match?q=AGAAAGGGGGTGTGTGAGTG&k=0&no_gap=0&offset=0&limit=50
0.505 | 0.296 | search_minus_done; http://172.18.8.135:50400/match?q=CACTCACACACCCCCTTTCT&k=0&no_gap=0&offset=0&limit=35
0.524 | 0.019 | cgi_end;

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