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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 04:29:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. botrytis mRNA for MADS-box protein AP1-c.
AJ505846.1:949-969
TATATATAATCATCAATAATAAAAATAATT949AGACGCATAGTATATTTTGGCTAGCTTCTTTCTATCCAATTAATATATTTT
Brassica oleracea homeotic protein boi1AP1 (Boi1AP1) mRNA, complete cds.
U67451.1:955-975
TATATATAATCATCAATAATAAAAATAATT955AGACGCATAGTATATTTTGGCTAGCTTCTTTCTATCCAATTAATATATTTT
BONOZ14TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOZ14, genomic survey sequence.
BZ484346.1:408-428
AAAATATATTAATTGGATAGAAAGAAGCTA408GCCAAAATATACTATGCGTCTAATTATTTTTATTATTGATGATTATATATA
Brassica oleracea var. alboglabra clone BoB028L01, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
EU642504.1:72943-72963
AAAATATATTAATTGGATAGAAAGAAGCTA72943GCCAAAATATACTATGCGTCTAATTATTTTTATTATTGATGATTATATATA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:39991765-39991785
AAAATATATTAATTGGATAGAAAGAAGCTA39991765GCCAAAATATACTATGCGTCTAATTATTTTTATTATTGATGATTATATATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGACGCATAGTATATTTTGGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGACGCATAGTATATTTTGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.092 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=AGACGCATAGTATATTTTGGC&k=0&no_gap=0&offset=0&limit=50
0.122 | 0.031 | search_minus_done; http://172.18.8.135:50400/match?q=GCCAAAATATACTATGCGTCT&k=0&no_gap=0&offset=0&limit=48
0.124 | 0.002 | cgi_end;

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