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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 04:37:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Heterocephalus glaber genome assembly, chromosome: 26.
OX090966.1:41643678-41643697
GAGATCTGGGGGTGTTTTGTTAAAGCAAAT41643678AGCAACCAGTAGCCTTTCCAATAGGAGTACTAATGGCACCTTATTTTTTT
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:12032593-12032612
ACATGTGCATAGAACCACCTTGGCCTCGGC12032593AGCAACCAGTAGCCTTTCCAAAGAGCTCACTCATCACCTCACGAGCAGGG
Crataegus laevigata genome assembly, chromosome: 14.
OY756951.1:12100546-12100565
ACATGTGCATAGAACCACCTTGGCCTCGGC12100546AGCAACCAGTAGCCTTTCCAAAGAGCTCACTCATCACCTCACGAGCAGGG
Pyrus communis genome assembly, chromosome: 16.
OY757083.1:9312776-9312795
ACATGTGCATAGAACCACCCTGGCCTCGGC9312776AGCAACCAGTAGCCTTTCCAAAGAGCTCACTCATCACCTCACGAGCAGGG
Heterocephalus glaber genome assembly, chromosome: 26.
OX090934.1:6704691-6704710
AAAAAAATAAGGTGCCATTAGTACTCCTAT6704691TGGAAAGGCTACTGGTTGCTATTTGCTTTAACAAAACACCCCCAGATCTC
Heterocephalus glaber genome assembly, chromosome: 28.
OZ001093.1:6704691-6704710
AAAAAAATAAGGTGCCATTAGTACTCCTAT6704691TGGAAAGGCTACTGGTTGCTATTTGCTTTAACAAAACACCCCCAGATCTC
Heterocephalus glaber genome assembly, chromosome: 28.
OZ001136.1:6786864-6786883
AAAAAAATAAGGTGCCATTAGTACTCCTAT6786864TGGAAAGGCTACTGGTTGCTATTTGCTTTAACAAAACACCCCCAGATCTC
000917AAFA006351HT (AAFA) Royal Gala apple skin peel, tree-ripened fruit 150 DAFB Malus domestica cDNA clone AAFA006351, mRNA sequence.
CN850233.1:563-582
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT563TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
010613AAXA006807HT (AAXA) Royal Gala 126 DAFB fruit core Malus domestica cDNA clone AAXA006807, mRNA sequence.
CN893003.1:561-580
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT561TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAAGTGGTTCTATGCACATGT
010722ABAB001429HT (ABAB) Pacific Rose spur buds from ON trees Malus domestica cDNA clone ABAB001429, mRNA sequence.
CN899981.1:201-220
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT201TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
000428AFBC006923HT (AFBC) Royal Gala pre-opened floral bud Malus domestica cDNA clone AFBC006923, mRNA sequence.
CN932074.1:111-130
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT111TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Mdlr7009B02.g1 Apple_EST_Mdlr Malus domestica cDNA similar to ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gb|AAB86803.1| pyruvate dehydrogenase E1 alpha subunit [Ar
DR996494.1:553-572
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT553TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Mdas9009D22.g1 Apple_EST_Mdas Malus domestica cDNA similar to ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gb|AAB86803.1| pyruvate dehydrogenase E1 alpha subunit [Ar
DR996786.1:283-302
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT283TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
061103AAWA006044CT (AAWA) Royal Gala 59 DAFB seeds Malus domestica cDNA clone AAWAA00604, mRNA sequence.
ES790078.1:639-658
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT639TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Mdstw6033G22.g1 Apple_EST_Mdstw Malus domestica cDNA 5' similar to ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gb|AAB86803.1| pyruvate dehydrogenase E1 alpha subuni
GO499463.1:52-71
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT52TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Mdfwg2099G14.g1 Apple_EST_Mdfwg Malus domestica cDNA 5' similar to ref|NP_171617.1| pyruvate dehydrogenase E1 alpha subunit [Arabidopsis thaliana] gb|AAB86803.1| pyruvate dehydrogenase E1 alpha subuni
GO503498.1:185-204
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT185TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
TSA: Pyrus pyrifolia mRNA, contig: contig_1161unknown.
FX408405.1:375-394
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT375TGGAAAGGCTACTGGTTGCTGCCGAGGCCAGGGTGGTTCTATGCACATGT
TSA: Pyrus x bretschneideri Unigene965_XinShao mRNA sequence.
JR596365.1:146-165
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT146TGGAAAGGCTACTGGTTGCTGCCGAGGCCAGGGTGGTTCTATGCACATGT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:21473462-21473481
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT21473462TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:32537245-32537264
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT32537245TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:21843444-21843463
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT21843444TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:20189698-20189717
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT20189698TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:21721872-21721891
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT21721872TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:21309386-21309405
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT21309386TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:20816441-20816460
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT20816441TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:17910514-17910533
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT17910514TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus domestica genome assembly, chromosome: 1.
OU696677.1:18051184-18051203
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT18051184TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus domestica genome assembly, chromosome: 1.
OU744542.1:21779891-21779910
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT21779891TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus domestica genome assembly, chromosome: 1.
OU744953.1:21313225-21313244
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT21313225TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT
Malus domestica genome assembly, chromosome: 1.
OU744991.1:18190033-18190052
CCCTGCTCGTGAGGTGATGAGTGAGCTCTT18190033TGGAAAGGCTACTGGTTGCTGCCGAGGCCAAGGTGGTTCTATGCACATGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGCAACCAGTAGCCTTTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGCAACCAGTAGCCTTTCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.093 | 0.085 | search_plus_done; http://172.18.8.135:50400/match?q=AGCAACCAGTAGCCTTTCCA&k=0&no_gap=0&offset=0&limit=50
0.876 | 0.783 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAAAGGCTACTGGTTGCT&k=0&no_gap=0&offset=0&limit=46
0.893 | 0.017 | cgi_end;

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