GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 08:13:18, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

AS1RN18P1G03.ab1 Healthy Roots (RN) Arachis stenosperma cDNA 5', mRNA sequence.
EH042021.1:258-277
ATGGTGTTTTTGTTCAGCAGTGTCCCTTTA258AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
AS1RN23P1F06.ab1 Healthy Roots (RN) Arachis stenosperma cDNA 5', mRNA sequence.
EH042510.1:546-565
ATGGTGTTTTTGTTCAGCAGTGTCCCTTTA546AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
AS1RN40P1D07.ab1 Healthy Roots (RN) Arachis stenosperma cDNA 5', mRNA sequence.
EH043795.1:330-349
ATGGTGTTTTTGTTCAGCAGTGTCCCTTTA330AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
Dur25.root.ADAA-aaf58a07.b1 DUR25-root Arachis duranensis cDNA 5', mRNA sequence.
GW935182.1:469-488
ATGGTGTTTTTGTTCAGCAGTGTCCCTTTA469AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
Dur25.seed.ADAA-aab54g09.b1 DUR25-seed Arachis duranensis cDNA 5', mRNA sequence.
GW952041.1:260-279
ATGGTGTTTTTGTTCAGCAGTGTCCCTTTA260AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
Ipa.ADAB-aae58g11.b1 IPA1-seed Arachis ipaensis cDNA 5', mRNA sequence.
GW988425.1:479-498
ATGGTGTTTTCGTTCAGCAATGTCCCTTTA479AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
TSA: Arachis duranensis DurSNP_c4355.Ardu mRNA sequence.
HP004346.1:469-488
ATGGTGTTTTTGTTCAGCAGTGTCCCTTTA469AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
TSA: Cannabis sativa PK03566.1_1.CasaPuKu mRNA sequence.
JP474210.1:555-574
AAGGGGTTTTCGTGCACGCTTGTCCGTACA555AGTACCCGGTTTTTCAAGCCGGGTTTCGGGTTTGTTTGGGTAAAGAAATG
Ipomoea trifida cultivar NCNSP0306 chromosome 9.
CP025652.1:8455059-8455078
ATGGGGTTTTCTTTCAAGAAAACCCTTTCA8455059AGTACCCGGTTTTTCAAGCCGGACTTAGGGTGTGTTTGGGAAAGGAAATG
Ipomoea triloba cultivar NCNSP0323 chromosome 9.
CP025668.1:9928201-9928220
ATGGGGTTTTCTTCCAAGAAAACCCTTTCA9928201AGTACCCGGTTTTTCAAGCCGGACTTAGGGTGTGTTTGGGAAAGGAAATG
Ipomoea triloba cultivar NCNSP0323 chromosome 14.
CP025673.1:9036987-9037006
ACGGTGTTTTCAAGTCCGAAAATCTCTTCA9036987AGTACCCGGTTTTTCAAGCCGGGCCTAGAGTTTGTCTAGGAAAAGATATG
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:2423860-2423879
ATGGTGTTTTCGTTCAGCAATGTCCCTTTA2423860AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:2397180-2397199
ATGGTGTTTTCGTTCAGCAATGTCCCTTTA2397180AGTACCCGGTTTTTCAAGCCGGGGTGAGAGTCTGTTTGGGAAAAGACTTG
Antiaris toxicaria isolate JCLG002 chromosome 1.
CP141153.1:81426860-81426879
ACGGGGTTTTCACCCCGGTTTGCCCATACA81426860AGTACCCGGTTTTTCAAGCCGGGCTTAGGGTTTGTTTGGGCAAGGAAATG
Antiaris toxicaria isolate JCLG002 chromosome 1.
CP141166.1:82133491-82133510
ACGGGGTTTTCACCCCGGTTTGTCCATACA82133491AGTACCCGGTTTTTCAAGCCGGGCTTAGGGTTTGTTTGGGCAAGGAAATG
Berberis vulgaris genome assembly, chromosome: 1.
OY747124.1:106192192-106192211
AGGGATTGTTTACACCCGAGAACCCGTTTA106192192AGTACCCGGTTTTTCAAGCCGGTTTAAGGGTCTGTTTGGGCAGAGAAATG
Vaccinium vitis-idaea genome assembly, chromosome: 6.
OY978220.1:12619816-12619835
ATGGAGTGTTCTATCAAGAGAATCCTTTCA12619816AGTACCCGGTTTTTCAAGCCGGGCTTAGGGTGTGTTTGGGGAAAGAAATG
Cornus suecica genome assembly, chromosome: 6.
OY998243.1:58082282-58082301
ACGGTGTTTTCACCCCGGAAAATCCATTCA58082282AGTACCCGGTTTTTCAAGCCGGAGTTAGGATTTGTTTGGGGAAAGAATTG
Ipomoea nil cDNA clone:jm39h04, 3' end, single read.
BJ578806.1:294-313
CATTTCCTTTCCCAAACACACCCTAAGTCC294GGCTTGAAAAACCGGGTACTTGAAAGGGTTTTCTTGGAAGAAAACCCCAT
Ipomoea nil cDNA clone:jmsf8i21, 3' end.
CJ769253.1:600-619
CATTTCCTTTCCCAAACACACCCTAAGTCC600GGCTTGAAAAACCGGGTACTTGAAAGGGTTTTCTTGGAAGAAAACCCCAT
TSA: Ipomoea batatas Contig_30666.Ipbalsr mRNA sequence.
JP135254.1:28-47
AGTTTGTATAGGAAAAGACATGGCCTT28GGCTTGAAAAACCGGGTACTTGAAGAGATTTTCGGACTTGAAAACTCCGT
Ipomoea trifida cultivar NCNSP0306 chromosome 14.
CP025657.1:11095568-11095587
CATGTCTTTCCCTAGACAGACCCTAGGCCC11095568GGCTTGAAAAACCGGGTACTTGAACAGATTTTCGGACTTGAAAATGCCAT
Ipomoea triloba cultivar NCNSP0323 chromosome 14.
CP025673.1:17649028-17649047
CATATCTTTTCCTAGACAAACTCTAGGCCC17649028GGCTTGAAAAACCGGGTACTTGAAGAGATTTTCGGACTTGAAAACACCGT
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:3720628-3720647
CAAGTCTTTTCCCAAACAGACTCTCACCCC3720628GGCTTGAAAAACCGGGTACTTAAAGGGACACTGCTGAACAAAAACACCAT
Rhododendron vialii isolate Sample 1 chromosome 13b.
CP127064.1:13210302-13210321
TATTTCCTTGCCCAAACAAACCCTCGGCCC13210302GGCTTGAAAAACCGGGTACTTGAAGGGGCTAACAGGGCAAAAAACTCCGC
Rhododendron vialii isolate Sample 1 chromosome 13a.
CP127077.1:12945386-12945405
TATTTCCTTGCCCAAACAAACCCTCGGCCC12945386GGCTTGAAAAACCGGGTACTTGAAGGGGCTAACAGGGCAAAAAACTCCGC
Ziziphus jujuba cultivar Dongzao chromosome 11.
CP134461.1:8511022-8511041
CATTTCTTTTCCCAAACACACCCTAAGCCC8511022GGCTTGAAAAACCGGGTACTTGAATGGATTCTCAGCCACAAACACACCGT
Mercurialis annua genome assembly, chromosome: LG1-X.
OW569319.1:62513848-62513867
CAAATCTTTACCTAAACAAACCCTAAACCC62513848GGCTTGAAAAACCGGGTACTTGTACGGACTTTCCGGTACATAAACTCCAT
Acer campestre genome assembly, chromosome: 7.
OX940805.1:23315494-23315513
CATTTCTTTGCCCAAACACACCCTAAGTCC23315494GGCTTGAAAAACCGGGTACTTATAAGGGTTTTCCGGGTAGAAAACACCAT
Berberis vulgaris genome assembly, chromosome: 10.
OY747133.1:7558398-7558417
CATTTCTTTGCCCAAACAGACCCTTAACCC7558398GGCTTGAAAAACCGGGTACTTAAACGGGTTCTCGGGTCTAAACAACCCGT
Euphorbia lathyris genome assembly, chromosome: 3.
OY755222.1:11109334-11109353
CATTTCCTTCCCTAAACAAACCCGAAACCC11109334GGCTTGAAAAACCGGGTACTTAAACGGACTCTCCGGTACAAAAATCCCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/AGTACCCGGTTTTTCAAGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : AGTACCCGGTTTTTCAAGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.903 | 0.895 | search_plus_done; http://172.18.8.135:50400/match?q=AGTACCCGGTTTTTCAAGCC&k=0&no_gap=0&offset=0&limit=50
1.065 | 0.162 | search_minus_done; http://172.18.8.135:50400/match?q=GGCTTGAAAAACCGGGTACT&k=0&no_gap=0&offset=0&limit=32
1.074 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).