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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 21:37:15, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Daphnia pulex isolate KAP106 chromosome 5.
CP087231.1:11219202-11219221
AGGAGAGTATGAGTCAGGGAAAAATCCGGA11219202ATAGAAATAGATGCTTCCAAGGTTTGCGTAAGACTACCAGAGTGGACGGG
Daphnia pulex isolate KAP4 chromosome 5.
CP087243.1:11556759-11556778
AGGAGAGTATGAGTCAGGGAAAAATCCGGA11556759ATAGAAATAGATGCTTCCAAGGTTTGCGTGAGACTACCAGAGTGGACGGG
Daphnia pulex isolate STM2 chromosome 5.
CP087255.1:11424928-11424947
AGGAGAGTATGAGTCAGGGAAAAATCCGGA11424928ATAGAAATAGATGCTTCCAAGGTTTGCGTGAGACTACCAGAGTGGACGGG
Pecten maximus genome assembly, chromosome: 11.
LR736848.1:4481844-4481863
TACTTCTCCATCTTGGTATTTGTGACATTT4481844ATAGAAATAGATGCTTCCAAGTTCCTGCCAAATGTTCTGATGAAAAACCA
Anisus vortex genome assembly, chromosome: 16.
OX421507.1:15564318-15564337
CAACAGGAAGAACTCTGTGTTAGCCTTAGT15564318ATAGAAATAGATGCTTCCAACTCTGGTACTTTACAGGTAGGTCTATGTAG
Macaca fascicularis complete genome, chromosome chr2.
LT160001.1:118016960-118016979
GGAAGGGGGAAAACAAGCCTGAGGATTTTG118016960TTGGAAGCATCTATTTCTATATAAACAGTTATCATCTAAATTAAAATGAA
MUGQ_CH252P438H10Sp6_CP841_041 CHORI-252 Vervet Monkey Library Chlorocebus aethiops genomic clone CH252-438H10, genomic survey sequence.
ET436707.1:668-687
GGAAGGGGGAAAACAAGCCTGATGATTTTG668TTGGAAGCATCTATTTCTATATAAACAGTTATCATCTAAATTAAAATGAA
Ailanthus altissima genome assembly, chromosome: 12.
OX327694.1:26625356-26625375
TTCATGAATTGTTTATACAAAATATGTAGT26625356TTGGAAGCATCTATTTCTATCAGTTAAGAAGAAAAAAATTAGTTCTCAAT
Boloria selene genome assembly, chromosome: 16.
HG993148.1:1144219-1144238
GCGCTCCCTTGTTTAACAACATTTATGACT1144219TTGGAAGCATCTATTTCTATTTCTTAAAGTATCAACTTAAAATAGAAAGT
Pecten maximus genome assembly, chromosome: 17.
LR736854.1:20427049-20427068
GCCAAAAAAAAGAGAACATTTGGCAGGAAC20427049TTGGAAGCATCTATTTCTATAAATGTCACAAATACCAAGATGGAGAAGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATAGAAATAGATGCTTCCAA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATAGAAATAGATGCTTCCAA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.105 | 0.097 | search_plus_done; http://172.18.8.135:50400/match?q=ATAGAAATAGATGCTTCCAA&k=0&no_gap=0&offset=0&limit=50
0.173 | 0.068 | search_minus_done; http://172.18.8.135:50400/match?q=TTGGAAGCATCTATTTCTAT&k=0&no_gap=0&offset=0&limit=45
0.176 | 0.003 | cgi_end;

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