GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 08:14:04, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Ovis canadensis canadensis isolate 43U chromosome 7 sequence.
CP011892.1:85189238-85189257
CCAACATCAGAGCCAGGGACCCAAGATGGG85189238ATGAGAAGGAAGCTGCAGGAACTTAATCACGTCACTTATGCCATATGCTG
Sambucus nigra genome assembly, chromosome: 2.
OX422208.1:583696936-583696955
AATTACTTCCTTCCCGTAGTTCAAAGGGAG583696936ATGAGAAGGAAGCTGCAGGATGTGGTACAAGGGGAGCATTCTGTAGCGAA
Drepana falcataria genome assembly, chromosome: 2.
OX243923.1:12839157-12839176
ATAGCGAGGCTGTGGATGAGACTCCAGCGG12839157ATGAGAAGGAAGCTGCAGGAAGGCCGGTGTTCCAAGCAAAGTCCAAACAC
Dianthus caryophyllus mRNA, clone: CES04A22, 5' end sequence.
FY383626.1:296-315
GAATTTGTGGCGTGTGCGTGGCGTACGTCT296TCCTGCAGCTTCCTTCTCATCAGTTTCATCTACCAGAAGACGAGTGGTTA
Dianthus caryophyllus mRNA, clone: CES05E16, 5' end sequence.
FY384093.1:304-323
GAATTTGTGGCGTGTGCGTGGCGTACGTCT304TCCTGCAGCTTCCTTCTCATCAGTTTCATCTACCAGAAGACGAGTGGTTA
TSA: Dianthus caryophyllus mRNA, contig: CAK09.245.C1.
FX296972.1:302-321
GAATTTGTGGCGTGTGCGTGGCGTACGTCT302TCCTGCAGCTTCCTTCTCATCAGTTTCATCTACCAGAAGACGAGTGGTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGAGAAGGAAGCTGCAGGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGAGAAGGAAGCTGCAGGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.374 | 0.365 | search_plus_done; http://172.18.8.135:50400/match?q=ATGAGAAGGAAGCTGCAGGA&k=0&no_gap=0&offset=0&limit=50
0.603 | 0.229 | search_minus_done; http://172.18.8.135:50400/match?q=TCCTGCAGCTTCCTTCTCAT&k=0&no_gap=0&offset=0&limit=47
0.605 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).