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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:52:23, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. viridis mRNA, clone: KALE-116O12, 3' end sequence.
DK559820.1:354-375
AGCTGAAGCTCACATGGTTGCCTGAGATTA354ATGAGTTGGTGAAGCTCACGTTAACAGATTTTGATTACTTAATCACCAAGAA
Brassica oleracea var. viridis mRNA, clone: KALE-140D17, 3' end sequence.
DK568734.1:259-280
AGCTGAAGCTCACATGGTTGCCTGAGATTA259ATGAGTTGGTGAAGCTCACGTTAACAGATTTTGATTACTTAATCACCAAGAA
50ETGS2H_RP_006_G01_04SEP2004_003 Germinating seeds 2h Brassica napus cDNA 5', mRNA sequence.
EE435120.1:160-181
AGCTGAAGCTCACATGGTTGCCTGAGATTA160ATGAGTTGGTGAAGCTCACGTTAACAGATTTTGATTACTTAATCACCAAGAA
50ETGS2H_RP_007_B10_04SEP2004_078 Germinating seeds 2h Brassica napus cDNA 5', mRNA sequence.
EE435155.1:152-173
AGCTGAAGCTCACATGGTTGCCTGAGATTA152ATGAGTTGGTGAAGCTCACGTTAACAGATTTTGATTACTTAATCACCAAGAA
RS2C409TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896240.1:211-232
AGCTGAAGCTCACGTGGCTTCCAGAGACTA211ATGAGTTGGTGAAGCTCACGTTAACAGACTTTGATTACTTGATCACCAAGAA
RS2EE44TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY941106.1:498-519
AGCTGAAGCTCACGTGGCTTCCAGAGACTA498ATGAGTTGGTGAAGCTCACGTTAACAGACTTTGGTTACTTGATCACCAAGAA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12167.
FX666464.1:2018-2039
AGCTGAAGCTCACGTGGCTTCCAGAGACTA2018ATGAGTTGGTGAAGCTCACGTTAACAGACTTTGATTACTTGATCACCAAGAA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:65483123-65483144
AGCTGAAGCTCACATGGTTGCCTGAGATTA65483123ATGAGTTGGTGAAGCTCACGTTAACAGATTTTGATTACTTAATCACCAAGAA
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:12938893-12938914
AGCTGAAGCTCACGTGGCTTCCAGAGACTA12938893ATGAGTTGGTGAAGCTCACGTTAACAGACTTTGATTACTTGATCACCAAGAA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:12938893-12938914
AGCTGAAGCTCACGTGGCTTCCAGAGACTA12938893ATGAGTTGGTGAAGCTCACGTTAACAGACTTTGATTACTTGATCACCAAGAA
RS2EE44JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EY936749.1:440-461
TTCTTGGTGATCAAGTAACCAAAGTCTGTT440AACGTGAGCTTCACCAACTCATTAGTCTCTGGAAGCCACGTGAGCTTCAGCT
Raphanus sativus mRNA, clone: RSCR19M03, 5' end sequence.
FY445810.1:388-409
TTCTTGGTGATCAAGTAATCAAAGTCTGTT388AACGTGAGCTTCACCAACTCATTAGTCTCTGGAAGCCACGTGAGCTTCAGCT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_19210.
FX728957.1:343-364
TTCTTGGTGATCAAGTAATCAAAGTCTGTT343AACGTGAGCTTCACCAACTCATTAGTCTCTGGAAGCCACGTGAGCTTCAGCT
TSA: Raphanus sativus RS22987 mRNA sequence.
JT807534.1:296-317
TTCTTGGTGATCAAGTAATCAAAGTCTGTT296AACGTGAGCTTCACCAACTCATTAGTCTCTGGAAGCCACGTGAGCTTCAGCT
Brassica napus genome assembly, chromosome: C09.
HG994373.1:3680498-3680519
TTCTTGGTGATTAAGTAATCAAAATCTGTT3680498AACGTGAGCTTCACCAACTCATTAATCTCAGGCAACCATGTGAGCTTCAGCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATGAGTTGGTGAAGCTCACGTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATGAGTTGGTGAAGCTCACGTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.431 | 0.422 | search_plus_done; http://172.18.8.135:50400/match?q=ATGAGTTGGTGAAGCTCACGTT&k=0&no_gap=0&offset=0&limit=50
0.645 | 0.214 | search_minus_done; http://172.18.8.135:50400/match?q=AACGTGAGCTTCACCAACTCAT&k=0&no_gap=0&offset=0&limit=40
0.648 | 0.003 | cgi_end;

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