GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-07 05:30:08, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

KBrB080J08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB080J08, genomic survey sequence.
DX070982.1:640-659
GAGAGAGAGCGACTGAAACAATCTTCAGAT640ATTCTTATTTATAGGCCCGCCGAAACAGAGAGGAGGAGGAGGAGGAAAGA
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:34139979-34139998
GAGAGAGAGCGACTGAAACAATCTTCAGAT34139979ATTCTTATTTATAGGCCCGCCGAAACAGAGAGGAGGAGGAAAGAGATTAG
Brassica rapa subsp. pekinensis, pooled multiple clones, WORKING DRAFT SEQUENCE, 882 unordered pieces.
FJ789639.1:2645581-2645600
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2645581GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica napus genome assembly, chromosome: A07.
HG994361.1:2498794-2498813
CTAATCTCTTTCCTCCTCCTCTCTGTTTCG2498794GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica rapa genome, scaffold: A07.
LR031574.1:2509654-2509673
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2509654GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:2521458-2521477
TCTTTCCTCCTCCTCCTCCTCTCTGTTTCG2521458GCGGGCCTATAAATAAGAATATCTGAAGATTGTTTCAGTCGCTCTCTCTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/ATTCTTATTTATAGGCCCGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : ATTCTTATTTATAGGCCCGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.121 | 0.112 | search_plus_done; http://172.18.8.135:50400/match?q=ATTCTTATTTATAGGCCCGC&k=0&no_gap=0&offset=0&limit=50
0.148 | 0.027 | search_minus_done; http://172.18.8.135:50400/match?q=GCGGGCCTATAAATAAGAAT&k=0&no_gap=0&offset=0&limit=48
0.151 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).