GGGenome | Results

Raja brachyura genome assembly, chromosome: 12.
OY740792.1:27664716-27664734

TCAGTCACCATGAACTGGTGGTCTTTTCAA27664716CACATCGTCACCAATTGTTTCATCACATACAAATGATCGGAGATGGTAT

BN25.059P03F011129 BN25 Brassica napus cDNA clone BN25059P03, mRNA sequence.
CD825168.1:69-87

AGGGTTTTCAATCACAAATCCGAATGGCAG69CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

BN25.068F02F020125 BN25 Brassica napus cDNA clone BN25068F02, mRNA sequence.
CD827681.1:91-109

TAGGGTTTTCAATCAAAATCCGAATGGCAG91CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

38RDBRM_UP_022_H04_10JUL2004_018 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX267494.1:93-111

TAGGGTTTTCAATCAAAATCCGAATGGCAG93CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica oleracea var. viridis mRNA, clone: KALE-027K07, 5' end sequence.
DK466111.1:111-129

AGGGTTTTCAATCACAAATCCGAATGGCAG111CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

Brassica oleracea var. viridis mRNA, clone: KALE-055G07, 5' end sequence.
DK476716.1:22-40

GAATCAAAATCCGAATGGCAG22CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica oleracea var. viridis mRNA, clone: KALE-058A22, 5' end sequence.
DK477738.1:63-81

TAGGGTTTTCAATCAAAATCCGAATGGCAG63CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica oleracea var. viridis mRNA, clone: KALE-144K11, 5' end sequence.
DK510859.1:115-133

AGGGTTTTCAATCACAAATCCGAATGGCAG115CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

32ETGS24_UP_012_E05_09FEB2005_039 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE426501.1:95-113

AGGGTTTTCAATCACAAATCCGAATGGCAG95CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

BNZB_RP_012_C11_26APR2004_091 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE557164.1:278-296

TAGGGTTTTCAATCAAAATCCGAATGGCAG278CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

EST2639 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B110A061, mRNA sequence.
EL625133.1:136-154

TATGGTTTCAATCACAAATCCGAATGGCAG136CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

BNAEN1GH_UP_056_B09_21JUL2006_077 Brassica napus BNAEN1GH Brassica napus cDNA 5', mRNA sequence.
ES990509.1:68-86

AGGGTTTTCAATCACAAATCCGAATGGCAG68CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

0118124 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV112812.1:128-146

AGGGTTTTCAATCACAAATCCGAATGGCAG128CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

0120207 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV114895.1:127-145

AGGGTTTTCAATCACAAATCCGAATGGCAG127CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB039A19, complete sequence.
AC189335.2:109588-109606

TAGGGTTTTCAATCAAAATCCGAATGGCAG109588CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:40740656-40740674

TAGGGTTTTCAATCAAAATCCGAATGGCAG40740656CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica napus genome assembly, chromosome: A05.
HG994359.1:36752644-36752662

TAGGGTTTTCAATCAAAATCCGAATGGCAG36752644CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica napus genome assembly, chromosome: C05.
HG994369.1:51183083-51183101

AGGGTTTTCAATCACAAATCCGAATGGCAG51183083CACATCGTCACCAATTGTTCACATACGCCCTCCAACCTTCTCTCGCCGC

Brassica rapa genome, scaffold: A05.
LR031570.1:42489588-42489606

TAGGGTTTCCAATCAAAATCCGAATGGCAG42489588CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica oleracea HDEM genome, scaffold: C5.
LR031877.1:49042060-49042078

TAGGGTTTTCAATCAAAATCCGAATGGCAG49042060CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Raphanus sativus genome assembly, chromosome: 4.
LR778313.1:39208584-39208602

TCTTTAGGGTTTTCAATCCCAGAATGGCAT39208584CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Brassica rapa genome assembly, chromosome: A05.
LS974621.2:39176918-39176936

TAGGGTTTCCAATCAAAATCCGAATGGCAG39176918CACATCGTCACCAATTGTTCACCTACGCCCTCCAACCTTCTCTCGCCGC

Ballota nigra genome assembly, chromosome: 10.
OX344729.1:47077263-47077281

CGTCACAAATTTTTTTTTTTCATGATGTTA47077263CACATCGTCACCAATTGTTATGAGTATCATCACTAAAGTTTATTGACAC

Diabrotica virgifera virgifera genome assembly, chromosome: 1.
OU830624.1:256112769-256112787

GTTGGGTTAGAGAATTTGGCGAAGTTAGTC256112769CACATCGTCACCAATTGTTTTATCGAAGTTTTATCTTCGTCCTTCAGAT

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_6384.
FX698880.1:1217-1235

GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG1217AACAATTGGTGACGATGTGCTGCCATTCGGATTTTGATTGAAAACCCTA

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_2494.
FX732733.1:1223-1241

GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG1223AACAATTGGTGACGATGTGCTGCCATTCGGATTTTGATTGAAAACCCTA

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_365.
FX733378.1:1795-1813

GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG1795AACAATTGGTGACGATGTGATGCCATTCTGGGATTGAAAACCCTAAAGA

BOMDG06TR BO_2_3_KB Brassica oleracea genomic clone BOMDG06, genomic survey sequence.
BH655918.1:664-682

GCGGCGAAAGAAGGTTGGAGGGCGTATGTG664AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT

BOT01-35P19TR BOT01 Brassica oleracea genomic clone BOT01-35P19, genomic survey sequence.
FI700191.1:390-408

GCGGCGAGAGAAGGTTGGAGGGCGTATGTG390AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT

BOT01-57J10TR BOT01 Brassica oleracea genomic clone BOT01-57J10, genomic survey sequence.
FI716890.1:647-665

GCGGCGAGAGAAGGTTGGAGGGCGTATGTG647AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT

BOT01-87P13TF BOT01 Brassica oleracea genomic clone BOT01-87P13, genomic survey sequence.
FI737384.1:143-161

GCGGCGAGAGAAGGTTGGAGGGCGTATGTG143AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT

Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:6582692-6582710

GCGGCGAGAGAAGGTTGGAGGGCGTATGTG6582692AACAATTGGTGACGATGTGCTGCCATTCGGATTTGTGATTGAAAACCCT

Raphanus sativus genome assembly, chromosome: 5.
OY743211.1:4824367-4824385

GCGGCGAGAGAAGGTTGGAGGGCGTAGGTG4824367AACAATTGGTGACGATGTGATGCCATTCTGGGATTGAAAACCCTAAAGA

Draba incana genome assembly, chromosome: 6.
OY755207.1:10971315-10971333

ACGGCGGAAGAAGGTTGAAGCGCGTAGCTA10971315AACAATTGGTGACGATGTGCCATTCGATTTGAAGAAACCCTAAAAGAGG

Parashewanella spongiae strain HJ039 chromosome, complete genome.
CP037952.1:5171741-5171759

GTCTGAATCCAATCCCGACGGTTATCCACT5171741AACAATTGGTGACGATGTGACCGTGGGCCACAAAGCCATGCTGCATGGT

Acrobasis repandana genome assembly, chromosome: 15.
OY756229.1:20823728-20823746

AGAAAAGGCTGATTGTTTATTGATTGTTAA20823728AACAATTGGTGACGATGTGATTTGATTTGCAAATAGAGTGTGTTTAGTA

Data Export:

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Debug Info:

0.009 | 0.009 | search_start;
0.779 | 0.770 | search_plus_done; http://172.18.8.135:50400/match?q=CACATCGTCACCAATTGTT&k=0&no_gap=0&offset=0&limit=50
0.937 | 0.159 | search_minus_done; http://172.18.8.135:50400/match?q=AACAATTGGTGACGATGTG&k=0&no_gap=0&offset=0&limit=26
0.946 | 0.009 | cgi_end;

Summary:

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