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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:50:27, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Electrona antarctica genome assembly, chromosome: 2.
OX578247.1:42977402-42977421
CTGCTGTTTAATGTCACCACTTTCTTCTCA42977402CACCCTGCAGCTTTTAGACCTACAGTAAAGTCAGAAAATGTCAGCCTGTT
Gymnoscopelus braueri genome assembly, chromosome: 12.
OY725519.1:16123004-16123023
CTGCTGTTTAATGTCACCACTTTCTTCTCA16123004CACCCTGCAGCTTTTAGACCAACAGTAAAGTCAGAAAAAGTCAGCCTGTT
Protomyctophum bolini genome assembly, chromosome: 5.
OZ001270.1:12002168-12002187
CTGCTGTTTAATGTCACCACTTTCTTCTCA12002168CACCCTGCAGCTTTTAGACCTACAGTAAAGTCAGAAAATGTCAGCCTGTT
Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
AP015038.1:12277901-12277920
CTCAAGATGCGTTTGATGCGTTGGATCTTC12277901CACCCTGCAGCTTTTAGACCAGTTATGGATTTTGGACCAATGGATTTATC
Lotus japonicus B-129 DNA, chromosome 1, complete sequence.
AP022629.1:134641521-134641540
TTTTGGATATGTTGAATGCGCTTGACCTTC134641521CACCCTGCAGCTTTTAGACCCCTTATGGATTCAGGACTGATTGATTCATC
Glycine max cultivar Williams 82 chromosome 10.
CP126435.1:42619067-42619086
TTTAAGATACGTTTGATGCGTTTGATCTTC42619067CACCCTGCAGCTTTTAGACCCCTTATAGATTTGTAACCAATGGATTCATC
Gymnoscopelus microlampas genome assembly, chromosome: 10.
OY732712.1:33172602-33172621
AACAGGCTGACTTTTTCTGACTTTACTGTT33172602GGTCTAAAAGCTGCAGGGTGTGAGAAGAAAGTGGTGACATTAAACAGCAG
Sequence 17047 from patent US 9029636.
HK926110.1:979-998
GATGAATCCATTGGTTACAAATCTATAAGG979GGTCTAAAAGCTGCAGGGTGGAAGATCAAACGCATCAAACGTATCTTAAA
sr09f06.y1 Gm-c1049 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1049-2172 5' similar to TR:O80649 O80649 T14N5.1 PROTEIN, mRNA sequence.
BE801128.1:179-198
GATGAATCCATTGGTTACAAATCTATAAGG179GGTCTAAAAGCTGCAGGGTGGAAGATCAAACGCATCAAACGTATCTTAAA
fbnb004e009c03f0 Brassica napus methylation filtered library (LibID: 147) Brassica napus genomic, genomic survey sequence.
CZ887542.1:315-334
GATGAATCCATTGGTTACAAATCTATAAGG315GGTCTAAAAGCTGCAGGGTGGAAGATCAAACGCATCAAACGTATCTTAAA
GT_DBa167N02.F GT_DBa Glycine tomentella genomic 5', genomic survey sequence.
HN637129.1:114-133
GATGAATCCATTGGTTACAAATCCATAAGG114GGTCTAAAAGCTGCAGGGTGGAAGATCAAACGCATCAAACGCATCTTAAA
Lotus japonicus genomic DNA, chromosome 1, clone: LjB140D10, BM1282.
AP007957.2:143612-143631
GATGAATCAATCAGTCCTGAATCCATAAGG143612GGTCTAAAAGCTGCAGGGTGGAAGGTCAAGCGCATTCAACATATCCAAAA
37189 Glycine max young leaves DNA Glycine max STS genomic, sequence tagged site.
GF094103.1:130-149
GATGAATCCATTGGTTACAAATCTATAAGG130GGTCTAAAAGCTGCAGGGTGGAAGATCAAACGCATCAAACGTATCTTAAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACCCTGCAGCTTTTAGACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCCTGCAGCTTTTAGACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=CACCCTGCAGCTTTTAGACC&k=0&no_gap=0&offset=0&limit=50
0.230 | 0.120 | search_minus_done; http://172.18.8.135:50400/match?q=GGTCTAAAAGCTGCAGGGTG&k=0&no_gap=0&offset=0&limit=44
0.235 | 0.005 | cgi_end;

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