GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-03-30 19:23:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Vigna angularis mRNA, clone: VES09K14.
HX945731.1:100-119
CATCCGAGGAACAAGCTTTCCGCAGTTGAA100CACCCTTTCGTCCACTCAATCACCCATGGCTCGCTCTTTCACTAACGTTA
Vigna angularis mRNA, clone: VES18B14.
HX948911.1:100-119
CATCCGAGGAACAAGCTTTCCGCAGTTGAA100CACCCTTTCGTCCACTCAATCACCCATGGCTCGCTCTTTCACTAACGTTA
Vigna angularis mRNA, clone: VES19C05.
HX949301.1:83-102
CATCCGAGGAACAAGCTTTCCGCAGTTGAA83CACCCTTTCGTCCACTCAATCACCCATGGCTCGCTCTTTCACTAACGTTA
Vigna angularis mRNA, clone: VES21A10.
HX950007.1:100-119
CATCCGAGGAACAAGCTTTCCGCAGTTGAA100CACCCTTTCGTCCACTCAATCACCCATGGCTCGCTCTTTCACTAACGTTA
Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
AP015041.1:25002384-25002403
CATCCGAGGAACAAGCTTTCCGCAGTTGAA25002384CACCCTTTCGTCCACTCAATCACCCATGGCTCGCTCTTTCACTAACGTTA
Vigna angularis mRNA, clone: VES08J19.
HX945329.1:535-554
TAACGTTAGTGAAAGAGCGAGCCATGGGTG535ATTGAGTGGACGAAAGGGTGTTCAACTGCGGAAAGCTTGTTCCTCGGATG
Vigna angularis mRNA, clone: VES16A19.
HX948139.1:535-554
TAACGTTAGTGAAAGAGCGAGCCATGGGTG535ATTGAGTGGACGAAAGGGTGTTCAACTGCGGAAAGCTTGTTCCTCGGATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CACCCTTTCGTCCACTCAAT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CACCCTTTCGTCCACTCAAT | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.436 | 0.428 | search_plus_done; http://172.18.8.135:50400/match?q=CACCCTTTCGTCCACTCAAT&k=0&no_gap=0&offset=0&limit=50
0.615 | 0.179 | search_minus_done; http://172.18.8.135:50400/match?q=ATTGAGTGGACGAAAGGGTG&k=0&no_gap=0&offset=0&limit=45
0.617 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).