GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-08 08:31:20, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Lotus japonicus genomic DNA, chromosome 2, clone: LjT07O13, TM0660.
AP007497.2:45032-45052
TTGGTTGGGATATGAAAATAAATTCAAAAT45032CAGAAGCGAGAAATATCAAACAAATACATCAAACCCAGAAAGAAAAGGGGT
Digitaria exilis genome assembly, chromosome: 2A.
LR994606.1:38072832-38072852
GGGCTAAGTTGTGCTTGCCTCTACTGTCAA38072832CAGAAGCGAGAAATATCAAACTTCTTCCTGCATTCAAGATTCCAACACAGC
Lotus japonicus B-129 DNA, chromosome 2, complete sequence.
AP022630.1:67651307-67651327
ACCCCTTTTCTTTCTGGGTTTGATGTATTT67651307GTTTGATATTTCTCGCTTCTGATTTTGAATTTATTTTCATATCCCAACCAA
Anisus vortex genome assembly, chromosome: 11.
OX421502.1:4106562-4106582
TATAGTGTTGAGGTACATGATGTAATCAAA4106562GTTTGATATTTCTCGCTTCTGCCATTTCTGTGTCATGTTGGACAATTTGAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGAAGCGAGAAATATCAAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGAAGCGAGAAATATCAAAC | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.091 | 0.083 | search_plus_done; http://172.18.8.135:50400/match?q=CAGAAGCGAGAAATATCAAAC&k=0&no_gap=0&offset=0&limit=50
0.106 | 0.015 | search_minus_done; http://172.18.8.135:50400/match?q=GTTTGATATTTCTCGCTTCTG&k=0&no_gap=0&offset=0&limit=48
0.108 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).