GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-07 03:17:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Dianthus caryophyllus mRNA, clone: CES15C20, 5' end sequence.
FY387839.1:734-753
ACATGGCCGCGCATCTTCTTGAAATGTGAG734CAGGAACGTCGACTACGACAACAACAGATTGTTGTTGTTGTTGCTTTGGA
Dianthus caryophyllus mRNA, clone: CES08B19, 5' end sequence.
FY385166.1:167-186
AATACTTCCAAAGCAACAACAATCTGTTGT167TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT
Dianthus caryophyllus mRNA, clone: CES23E05, 5' end sequence.
FY390882.1:173-192
TCCAAAGCAACAACAACAACAATCTGTTGT173TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.715.C1.
FX298016.1:166-185
AATACTTCCAAAGCAACAACAATCTGTTGT166TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT
TSA: Dianthus caryophyllus mRNA, contig: CAK09.715.C2.
FX298017.1:173-192
TCCAAAGCAACAACAACAACAATCTGTTGT173TGTCGTAGTCGACGTTCCTGCTCACATTTCAAGAAGATGCGCGGCCATGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGGAACGTCGACTACGACA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGAACGTCGACTACGACA | format : html | download : | debug :

0.008 | 0.008 | search_start;
0.179 | 0.171 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGAACGTCGACTACGACA&k=0&no_gap=0&offset=0&limit=50
0.362 | 0.183 | search_minus_done; http://172.18.8.135:50400/match?q=TGTCGTAGTCGACGTTCCTG&k=0&no_gap=0&offset=0&limit=49
0.365 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).