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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 21:47:05, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR4B130JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EV573450.1:697-716
GTGCGTTTTGGTTCTCAATCGCTGATGCAT697CAGGACCACCAGTGTTCAGACCCAGTAAATCATCTGTATCAATGATGTTC
RR3FE20JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
FD546837.1:624-643
GTGCGTTTTGGTTCTCAATCGCTGATGCAT624CAGGACCACCAGTGTTCAGACCCAGTAAGTCATCTGTATCAATGAAGTTC
Raphanus sativus mRNA, clone: RSCR08H12, 5' end sequence.
FY442292.1:566-585
GTGCGTTTTGGTTCTCAATCGCTGATGCAT566CAGGACCACCAGTGTTCAGACCCAGTAGATCATCTGTATCAATGATGTTC
0270362 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO937127.1:695-714
GTGCGTTTTGGTTCTCAATCGCTGATGCAT695CAGGACCACCAGTGTTCAGACCCAGTAGGTCATCTGTATCGATGATGTTC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_1512.
FX730583.1:660-679
GTGCGTTTTGGTTCTCAATCGCTGATGCAT660CAGGACCACCAGTGTTCAGACCCAGTAGATCATCTGTATCAATGATGTTC
TSA: Raphanus sativus RS20283 mRNA sequence.
JT804830.1:626-645
GTGCGTTTTGGTTCTCAATCGCTGATGCAT626CAGGACCACCAGTGTTCAGACCCAGTAGATCATCTGTATCAATGATGTTC
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:17062710-17062729
GTGCGTTTTGGTTCTCAATCGCTGATGCAT17062710CAGGACCACCAGTGTTCAGACCCTGTGTTGAAAATTAAACAAAGAGAACA
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:17062710-17062729
GTGCGTTTTGGTTCTCAATCGCTGATGCAT17062710CAGGACCACCAGTGTTCAGACCCTGTGTTGAAAATTAAACAAAGAGAACA
RR4B130TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EV568808.1:501-520
GAACATCATTGATACAGATGATTTACTGGG501TCTGAACACTGGTGGTCCTGATGCATCAGCGATTGAGAACCAAAACGCAC
RS1A819TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EW714511.1:60-79
GAACATCATTGATACAGATGATTTACTGGG60TCTGAACACTGGTGGTCCTGATGCATCAGCGATTGAGAACCAAAACGCAC
RR3FE20TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD550942.1:549-568
GAACTTCATTGATACAGATGACTTACTGGG549TCTGAACACTGGTGGTCCTGATGCATCAGCGATTGAGAACCAAAACGCAC
RR4FD16TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
FD558873.1:154-173
GAACATCATTGATACAGATGATTTACTGGG154TCTGAACACTGGTGGTCCTGATGCATCAGCGATTGAGAACCAAAACGCAC
Raphanus sativus mRNA, clone: RSCF09C09, 5' end sequence.
FY430156.1:518-537
GAACATCATTGATACAGATGATCTACTGGG518TCTGAACACTGGTGGTCCTGATGCATCAGCGATTGAGAACCAAAACGCAC
Raphanus sativus mRNA, clone: RSCS10N16, 5' end sequence.
FY449604.1:636-655
GAACATCATTGATACAGATGATCTACTGGG636TCTGAACACTGGTGGTCCTGATGCATCAGCGATTGAGAACCAAAACGCAC
TSA: Raphanus sativus var. sativus RNA, contig: WG3_12031.
FX657651.1:1307-1326
GAACATCATTGATACAGATGATCTACTGGG1307TCTGAACACTGGTGGTCCTGATGCATCAGCGATTGAGAACCAAAACGCAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGGACCACCAGTGTTCAGA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGGACCACCAGTGTTCAGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.427 | 0.418 | search_plus_done; http://172.18.8.135:50400/match?q=CAGGACCACCAGTGTTCAGA&k=0&no_gap=0&offset=0&limit=50
0.906 | 0.480 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGAACACTGGTGGTCCTG&k=0&no_gap=0&offset=0&limit=42
0.911 | 0.004 | cgi_end;

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