GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-13 05:07:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Lagenorhynchus albirostris genome assembly, chromosome: 7.
OX459079.1:34348242-34348259
ATCCGGTCTTATCAGCAGCCCAACTAGGTC34348242CAGTTTGAGCCGAAGCTTTAGTCACGATCATTTTGTGAACATGCAGTT
Plecotus auritus genome assembly, chromosome: 9.
OY734030.1:27421794-27421811
GCATTTCTTTCTTAGAAAAGGCTGGGCCCC27421794CAGTTTGAGCCGAAGCTTTGGGGTTCTGTTGGTGTATGTTTGGTTTAG
Poecilia reticulata genome assembly, chromosome: 9.
LR880653.1:13983752-13983769
TGCTCTCTGTTTTTACAGATAGTTTCAATT13983752CAGTTTGAGCCGAAGCTTCACCTAGCAGACGATTTAAAATTTATACGT
Acanthopagrus latus isolate v.2019 genome assembly, chromosome: 5.
LR884464.1:29220421-29220438
AGACACACGGCAGCAGCCAAACTCGTAAAC29220421CAGTTTGAGCCGAAGCTTTCATTAATTTCACTCACCTGAGTGATATTG
Gobius niger genome assembly, chromosome: 3.
OX637597.1:12003726-12003743
GCTTAAATCTTCAACTACAGTGTGGACAGT12003726CAGTTTGAGCCGAAGCTTGTCCAGCAGGTGAATGGCGCTGTCGTGATC
KR 1020220135918-A/43: SNP markers and primer sets for high-throughput identification of cabbage cultivar and uses thereof.
PE014915.1:1708-1725
GAAGAAATGGCTTGGACTGGGCCTAGAAGT1708CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
KR 1020220135918-A/177: SNP markers and primer sets for high-throughput identification of cabbage cultivar and uses thereof.
PE015049.1:1687-1704
GAAGAAATGGCTTGGACTGGGCCTAGAAGT1687CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Brassica oleracea var. viridis mRNA, clone: KALE-021K15, 5' end sequence.
DK463830.1:789-806
TGAAGAATGGCTTGGACTGGGCCTAGAAGT789CAGTTTGAGCCGAAGCTTGAAGAATGGATGGATATTTAGCCAAGGTCA
TSA: Raphanus sativus var. sativus RNA, contig: WG3_23966.
FX680525.1:126-143
GAAGAAATGGCTAGGACTCGGCTTAGAAGT126CAGTTTGAGCCGAAGCTTGGGAGAGATCGATGGATATTTAGCAAAGGT
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_49052.
FX769001.1:143-160
GAAGAAATGGCTAGGACTCGGCTTAGAAGT143CAGTTTGAGCCGAAGCTTGGGAGAGATCGATGGATATTTAGCAAAGGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A10 clone KBrB119O22, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234732.1:18603-18620
GAAGAAATGGCTTGGACTGGGCCTAGAAGT18603CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Raphanus sativus cultivar WK10039 clone RsH001C19, *** SEQUENCING IN PROGRESS ***, 5 ordered pieces.
AC255254.1:49452-49469
GAAGAAATGGCTAGGACTCGGCTTAGAAGT49452CAGTTTGAGCCGAAGCTTGGGAGAGATCGATGGATATTTAGCAAAGGT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:69418503-69418520
GAAGAAATGGCTTGGACTGGGCCTAGAAGT69418503CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:53280873-53280890
GAAGAAATGGCTTGGACTGGGCCTAGAAGT53280873CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:41452705-41452722
GAAGAAATGGCTTGGACTGGGCCTAGAAGT41452705CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Brassica rapa genome, scaffold: A09.
LR031568.1:57537660-57537677
GAAGAAATGGCTTGGACTGGGCCTAGAAGT57537660CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:50694291-50694308
GAAGAAATGGCTTGGACTGGGCCTAGAAGT50694291CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:68061146-68061163
GAAGAAATGGCTTGGACTGGGCCTAGAAGT68061146CAGTTTGAGCCGAAGCTTGGAAGAAATGGATGGATATTTAGCCAAGGT
Sulfidibacter corallicola strain M133 chromosome, complete genome.
CP071793.1:10367003-10367020
CCACCAACAGCCGCGCGAACTCTCGAACAA10367003CAGTTTGAGCCGAAGCTTGGCGCGCCCCGGGAAATGGCGGCGCCAGCT
Schrankia costaestrigalis genome assembly, chromosome: 3.
FR997828.1:2654092-2654109
CAAGGCTGGAGGGACGGTTTAGGAAAGGAT2654092CAGTTTGAGCCGAAGCTTGGGGCTATCGCGGCTGTACAATGGAACTTA
Lymantria monacha genome assembly, chromosome: 3.
LR991084.1:33101324-33101341
CAAGGCTGGAGGAATGGTTTAGAAAAGGAT33101324CAGTTTGAGCCGAAGCTTGGGGCAATCTCGGCCGCACAATGAAACTTA
Pammene aurita genome assembly, chromosome: 25.
OX352312.1:5570969-5570986
TCCCTGAGCAGCTAAATGTCAGTTTTCTGT5570969CAGTTTGAGCCGAAGCTTTGTTGATTTATAACTCAATACAAACAATTG
Nephrocerus scutellatus genome assembly, chromosome: 5.
OX352765.1:26549667-26549684
TCAATCTTTAATTGGAAATTAGACACGTAG26549667CAGTTTGAGCCGAAGCTTAACCAGTATTTTTCAATAAATAAAATAAAT
Micromys minutus genome assembly, chromosome: 29.
OZ004809.1:7816360-7816377
CATGGAGATGCAGCTGAAGATCAGGTTCAT7816360AAGCTTCGGCTCAAACTGCTTAAAAAATTAAAGGCAAAAAAGAAGAAA
CATH10629.fwd CATH Sporobolomyces roseus IAM 13481 whole cells Sporobolomyces roseus IAM 13481 cDNA clone CATH10629 5', mRNA sequence.
EY979072.1:371-388
AAGATCACCCATTCCAAGTCGAAGCCTCGA371AAGCTTCGGCTCAAACTGTCACTGCCAGCGACCTCACCCTCGACAGCG
RS2G165JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD576040.1:438-455
ACCTTTGCTAAATATCCATCGATCTCTCCC438AAGCTTCGGCTCAAACTGACTTCTAAGCCGAGTCCTAGCCATTTCTTC
BOGYU89TF BOGY Brassica oleracea genomic clone BOGYU89, genomic survey sequence.
BH510460.1:489-506
ACCTTGGCTAAATATCCATCCATTTCTTCC489AAGCTTCGGCTCAAACTGACTTCTAGGCCCAGTCCAAGCCATTTCTTC
BOGYI45TF BOGY Brassica oleracea genomic clone BOGYI45, genomic survey sequence.
BH592785.1:486-503
ACCTTGGCTAAATATCCATCCATTTCTTCC486AAGCTTCGGCTCAAACTGACTTCTAGGCCCAGTCCAAGCCATTTCTTC
AIAA-aaa59a03.g1 Ancylostoma caninum whole genome shotgun library (AIAAGSS 001) Ancylostoma caninum genomic, genomic survey sequence.
CW966124.1:91-108
GCGTGGTGGGTCCACTTCAGGGCGATGCGG91AAGCTTCGGCTCAAACTGCTCATAAACACACTTAGAACAATTAGATCT
BoTo122G24/FE BOTO1 Brassica oleracea genomic, genomic survey sequence.
ET052005.1:1-18
1AAGCTTCGGCTCAAACTGACTTCTAGGCCCAGTCCAAGCCATTTCTTC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB046G18, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189365.2:9444-9461
ACCTTGGCTAAATATCCATCCATTTCTTCC9444AAGCTTCGGCTCAAACTGACTTCTAGGCCCAGTCCAAGCCATTTCTTC
Raphanus sativus cultivar WK10039 clone RsH014F17, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces.
AC255135.1:91030-91047
ACCTCGGCTAAATATCCATCCATTTCTTCC91030AAGCTTCGGCTCAAACTGACTTCTAGGCCCAGTCCTAGCCATTTCTTC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:220568-220585
ACCTTGGCTAAATATCCATCCATTTCTTCC220568AAGCTTCGGCTCAAACTGACTTCTAGGCCCAGTCCAAGCCATTTCTTC
Quercus variabilis isolate HB chromosome 3b.
CP129435.1:58359555-58359572
TCATTGAGCTTGATGGACTTTGGGCTTAGC58359555AAGCTTCGGCTCAAACTGCATATACACATGACATACCTTTCTTTCTAG
Quercus variabilis isolate HB chromosome 3a.
CP129447.1:61206257-61206274
TCATTGAGCTTGATGGACTTTGGGCTTAGC61206257AAGCTTCGGCTCAAACTGCATATACACATGACATACCTTTCTTTCTAG
Raphanus sativus genome assembly, chromosome: 7.
LR778316.1:28153567-28153584
ACCTTTGCTAAATATCCATCGATCTCTCCC28153567AAGCTTCGGCTCAAACTGACTTCTAAGCCGAGTCCTAGCCATTTCTTC
Raphanus sativus genome assembly, chromosome: 1.
OY743207.1:141118-141135
ACCTTTGCTAAATATCCATCGATCTCTCCC141118AAGCTTCGGCTCAAACTGACTTCTAAGCCGAGTCCTAGCCATTTCTTC
Quercus cerris genome assembly, chromosome: 5.
OY770010.1:54330429-54330446
TCATTGAGCTTGATGGACTTTGGGCTTAGC54330429AAGCTTCGGCTCAAACTGCATATACACATGACATACCTTTCTTTCTAG
Pandemis cinnamomeana genome assembly, chromosome: 3.
OW028705.1:1539760-1539777
ACAATTTATAGGACAACTGTATTTATGGAG1539760AAGCTTCGGCTCAAACTGTTTATTCGTCGTAACAAGTATTCTGTAATT
Dorcus parallelipipedus genome assembly, chromosome: 3.
OY284477.1:49577505-49577522
AACAATTGAAATAATCGTTGTAATGGGTTT49577505AAGCTTCGGCTCAAACTGGGCCTAAGAAGTATAAGCTTAGGCGTAGCG
Lymantria dispar genome assembly, chromosome: 4.
OY755129.1:4810920-4810937
TAAGTTTCATTGTGCGGCTGAGATTGCCCC4810920AAGCTTCGGCTCAAACTGATCCTTTTCTAAACCGTTCCACCAGCCTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CAGTTTGAGCCGAAGCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CAGTTTGAGCCGAAGCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.320 | 0.311 | search_plus_done; http://172.18.8.135:50400/match?q=CAGTTTGAGCCGAAGCTT&k=0&no_gap=0&offset=0&limit=50
0.528 | 0.208 | search_minus_done; http://172.18.8.135:50400/match?q=AAGCTTCGGCTCAAACTG&k=0&no_gap=0&offset=0&limit=27
0.540 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).