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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 07:35:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Digitaria exilis genome assembly, chromosome: 5A.
LR994612.1:37312677-37312696
TTCTGCAGCTGTTGTCCCACAGATGAGCCT37312677CATACCTCCCCGTCCATCTATGCCTAAAATAAATCAAAAGTAGAACCTTT
Phragmites australis genome assembly, chromosome: 2.
OY282613.1:47752466-47752485
TTCTGCAGCTGTTGTCCCACAGATGAGCCT47752466CATACCTCCCCGTCCATCTATGCCTAAATCCAATAAAAAGCAGAAGCTTT
IC0AAA22CC06RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY267839.1:751-770
CACCTCTATTTACCGAGGGGTCACTAGACA751TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
IC0AAA39DE01RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY275609.1:730-749
CACCTCTATTTACCGAGGGGTCACTAGACA730TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
IC0AAA41BF12RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY276534.1:416-435
CACCTCTATTTACCGAGGGGTCACTAGACA416TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
IC0AAA78BH08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence.
DY291553.1:733-752
CACCTCTATTTACCGAGGGGTCACTAGACA733TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
CS00-C3-700-028-H07-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cDNA, mRNA sequence.
EY694746.1:607-626
CACCTCTATTTACCGAGGGGTCACTAGACA607TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
CR05-C3-701-049-F09-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA, mRNA sequence.
EY797186.1:399-418
CACCTCTATTTACCGAGGGGTCACTAGACA399TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
IC0AAA78BH08RM1 IVIA1 Citrus clementina cDNA clone IC0AAA78BH08, mRNA sequence.
FC883898.1:733-752
CACCTCTATTTACCGAGGGGTCACTAGACA733TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
IC0AAA41BF12RM1 IVIA1 Citrus clementina cDNA clone IC0AAA41BF12, mRNA sequence.
FC887503.1:416-435
CACCTCTATTTACCGAGGGGTCACTAGACA416TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
IC0AAA39DE01RM1 IVIA1 Citrus clementina cDNA clone IC0AAA39DE01, mRNA sequence.
FC907326.1:730-749
CACCTCTATTTACCGAGGGGTCACTAGACA730TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
IC0AAA22CC06RM1 IVIA1 Citrus clementina cDNA clone IC0AAA22CC06, mRNA sequence.
FC910645.1:751-770
CACCTCTATTTACCGAGGGGTCACTAGACA751TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
Musa troglodytarum cultivar karat chromosome 3.
CP097505.1:2726766-2726785
CTGACGACGACGCATGTCGTCATCCAGGCA2726766TAGATGGACGGGGAGGTATGAAGCTCACCTCTGGGACAAGCACTGCTGGA
Musa acuminata subsp. malaccensis strain Doubled-haploid Pahang (DH-Pahang) genome assembly, chromosome: A03.
HG996468.1:2337249-2337268
TTGACGACGACGCATGTCGTCATCCAGGCA2337249TAGATGGACGGGGAGGTATGAAGCTCACCTCTGGGACAAGCACTGCTGGA
Digitaria exilis genome assembly, chromosome: 2A.
LR994606.1:1737486-1737505
ATCCGACGAGTGGGTAAAATTAAGCAGGCA1737486TAGATGGACGGGGAGGTATGAGGCACACCTGTGGGACAACAGCTGCAAGA
Digitaria exilis genome assembly, chromosome: 2B.
LR994607.1:1680840-1680859
ATCCGACGAGTGGGTAAAATTAAGCAGGCA1680840TAGATGGACGGGGAGGTATGAGGCACACCTGTGGGACAACAGCTGCAAGA
Citrus sinensis genome assembly, chromosome: 7.
OY754324.1:1790803-1790822
ATTTTTTTGGCTGCTTTGATGATGAAGACA1790803TAGATGGACGGGGAGGTATGAAGCTCACTTGTGGGATAACAGCTGCAGAA
Pseudodesulfovibrio thermohalotolerans strain MCM B-1480 chromosome, complete genome.
CP120635.1:1820123-1820142
AAATTCTCGTCGGCCATGGGGAAGCGGACA1820123TAGATGGACGGGGAGGTATGGTCCTCGTATTCCACTTCGGCCTCGGCCAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATACCTCCCCGTCCATCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATACCTCCCCGTCCATCTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.319 | 0.311 | search_plus_done; http://172.18.8.135:50400/match?q=CATACCTCCCCGTCCATCTA&k=0&no_gap=0&offset=0&limit=50
1.193 | 0.873 | search_minus_done; http://172.18.8.135:50400/match?q=TAGATGGACGGGGAGGTATG&k=0&no_gap=0&offset=0&limit=48
1.203 | 0.010 | cgi_end;

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