GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 18:11:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Onychomys arenicola genome assembly, chromosome: 1.
OX460347.1:6203698-6203719
TATACCTACTATTCTTAGACTTGGTCTTTT6203698CATGTTTCATGTTTCAGATTTCCTGGACATTTTGTGTTTTGACCTTTTTGGA
Onychomys arenicola genome assembly, chromosome: 1.
OX460442.1:5290293-5290314
TATACCTACTATTCTTAGACTTGGTCTTTT5290293CATGTTTCATGTTTCAGATTTCCTGGACATTTTGTGTTTTGACCTTTTTGGA
Argyrosomus regius genome assembly, chromosome: 10.
OX336891.1:354568-354589
TTCAGGCTTCATGTTTCAGATTTCAGATTT354568CATGTTTCATGTTTCAGATTTCATGTTTCAGTTTTCATGTTTCAGATTTCAT
Argyrosomus regius genome assembly, chromosome: 10.
OX336891.1:354846-354867
TTCATGTTTCATGGTGCATGTTTCAGTTTT354846CATGTTTCATGTTTCAGATTTCATGTTTCATGTTGCATGTTTCAGATTTCAT
Argyrosomus regius genome assembly, chromosome: 10.
OX336891.1:355082-355103
TTCATGTTTCATGGTGCATGTTTCAGTTTT355082CATGTTTCATGTTTCAGATTTCATGTTTCATGTTGCATGTTTCAGATTTCAT
Argyrosomus regius genome assembly, chromosome: 10.
OX336891.1:355318-355339
TTCATGTTTCATGGTGCATGTTTCAGTTTT355318CATGTTTCATGTTTCAGATTTCATGTTTCATGTTGCATGTTTCAGATTTCAT
Argyrosomus regius genome assembly, chromosome: 10.
OX336891.1:355675-355696
TTCATGTTGCAGATTTCATGTTTCAGATTT355675CATGTTTCATGTTTCAGATTTCATGTTTCAGGTTTCATGTTGCATGTTTCAG
Argyrosomus regius genome assembly, chromosome: 10.
OX336891.1:356677-356698
GTCACGTTTCAGATTTCATGTTTCAGTTTT356677CATGTTTCATGTTTCAGATTTCATGTCTCATGTTTCAGATTTCATGTTTCTA
Cyclopterus lumpus genome assembly, chromosome: 10.
OY735157.1:3418539-3418560
TTCATGATTTATGTTTCATGTTTCATGTTT3418539CATGTTTCATGTTTCAGATTTCATGTTTAATGTTTCATGGTTCATGTTTCAT
Lotus japonicus genomic DNA, chromosome 5, clone: LjB26D17, BM1652.
AP008196.2:5310-5331
TTGAGGTCCAAGTCTTTTTGCCACTTTCAT5310CATGTTTCATGTTTCAGATTTCATTTCTAACGATAGAAAATATTAATGGGTA
Lotus japonicus B-129 DNA, chromosome 5, complete sequence.
AP022633.1:47035406-47035427
TTGAGGTCCAAGTCTTTTTGTCACTTTCAT47035406CATGTTTCATGTTTCAGATTTCATTTCTAACGATAGAAAATATTAATGGGTA
Myopa tessellatipennis genome assembly, chromosome: 2.
OX031315.1:7828241-7828262
ATATGCACACACAAAATAATTATCTCCTGT7828241CATGTTTCATGTTTCAGATTTCATTTCTGATTTCGTGTCCTTGATTGTCTTT
Zeus faber genome assembly, chromosome: 9.
OY482853.1:8963655-8963676
GGGGAGTGAAAAGTGCATCGATGACAACAC8963655GAAATCTGAAACATGAAACATGAACGCTATCCAAGTGGTTTATTTTCACTCA
Lotus japonicus genomic DNA, chromosome 5, clone: LjT09O10, TM0341.
AP006655.1:12574-12595
TACCCATTAATATTTTCTATCGTTAGAAAT12574GAAATCTGAAACATGAAACATGATGAAAGTGGCAAAAAGACTTGGACCTCAA
Phorcus lineatus genome assembly, chromosome: 1.
OV121081.1:29351535-29351556
GATTATAGCATCAGCTAGATGAGTAACAAT29351535GAAATCTGAAACATGAAACATGATAATGACCATTATTCTAGAGGTGACGTTG
Scotopteryx bipunctaria genome assembly, chromosome: 7.
OX439447.1:6392635-6392656
ACAGGTTCCCTTGTTGTAATCTTGTAACCT6392635GAAATCTGAAACATGAAACATGAAGCTGATTAAGCACAGAAATAATTTATAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATGTTTCATGTTTCAGATTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATGTTTCATGTTTCAGATTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.138 | 0.130 | search_plus_done; http://172.18.8.135:50400/match?q=CATGTTTCATGTTTCAGATTTC&k=0&no_gap=0&offset=0&limit=50
0.183 | 0.045 | search_minus_done; http://172.18.8.135:50400/match?q=GAAATCTGAAACATGAAACATG&k=0&no_gap=0&offset=0&limit=38
0.185 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).