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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 07:35:40, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

EST2942 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B124F031, mRNA sequence.
EL625436.1:297-316
CGCAGAGATGGTTCAGCATGGCCTACGCTG297CATTGCTTTCTGTCGATCTCGCAAACTTTGCGAACTTGTTTTGTGTTATA
TSA: Chorispora bungeana CK_24084 mRNA sequence.
KA012151.1:146-165
TGCGGAGATGGTTCAGCATGGGCTACGTTG146CATTGCTTTCTGTCGATCTCGAAAACTTTGTGAACTTGTTTTATGTCTCA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.
AC189332.2:98953-98972
CGCAGAGATGGTTCAGCATGGCCTACGCTG98953CATTGCTTTCTGTCGATCTCGCAAACTTTGCGAACTTGTTTTGTGTTATA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:18575742-18575761
CGCAGAGATGGTTCAGCATGGCCTACGCTG18575742CATTGCTTTCTGTCGATCTCGCAAACTTTGCGAACTTGTTTTGTGTTATA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:62123274-62123293
CGCAGAGATGGTTCAGCATGGCCTACGCTG62123274CATTGCTTTCTGTCGATCTCGCAAACTTTGCGAACTTGTTTTGTGTTATA
Brassica rapa genome, scaffold: A10.
LR031577.1:15517192-15517211
CGCAGAGATGGTTCAGCATGGCCTACGCTG15517192CATTGCTTTCTGTCGATCTCGCAAACTTTGCGAACTTGTTTTGTGTTATA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:60131071-60131090
CGCAGAGATGGTTCAGCATGGCTTACGCTG60131071CATTGCTTTCTGTCGATCTCGCAAACTTTGCGAACTTGTATTGTGTTTTA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:18250772-18250791
CGCAGAGATGGTTCAGCATGGCCTACGCTG18250772CATTGCTTTCTGTCGATCTCGCAAACTTTGCGAACTTGTTTTGTGTTATA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_18450.
FX714413.1:273-292
TATAACACAAAACAAGTTCGCAAAGTTTGC273GAGATCGACAGAAAGCAATGCAGCGTAGGCCATGCTGAACCATCTCTGCG
TSA: Chorispora bungeana T_18104 mRNA sequence.
KA054934.1:370-389
TGAGACATAAAACAAGTTCACAAAGTTTTC370GAGATCGACAGAAAGCAATGCAACGTAGCCCATGCTGAACCATCTCCGCA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:2179293-2179312
TATAACACAAAACAAGTTCGCAAAGTTTGC2179293GAGATCGACAGAAAGCAATGCAGCGTAGGCCATGCTGAACCATCTCTGCG
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:3352597-3352616
TATAACACAAAACAAGTTCGCAAAGTTTGC3352597GAGATCGACAGAAAGCAATGCAGCGTAGGCCATGCTGAACCATCTCTGCG
Dichetophora obliterata genome assembly, chromosome: 4.
OY986438.1:80825875-80825894
AAACAGCATTTACACACGAAATTGAGGGAG80825875GAGATCGACAGAAAGCAATGAAACGCTTACGCGTACCGCCACTCGGCGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATTGCTTTCTGTCGATCTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTGCTTTCTGTCGATCTC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.242 | 0.233 | search_plus_done; http://172.18.8.135:50400/match?q=CATTGCTTTCTGTCGATCTC&k=0&no_gap=0&offset=0&limit=50
0.307 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=GAGATCGACAGAAAGCAATG&k=0&no_gap=0&offset=0&limit=42
0.311 | 0.003 | cgi_end;

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