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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 04:48:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:61171697-61171716
AGAGGAATGGAGACAAAGAATAAAGATGAA61171697CATTTGGGGGTTAGGGTTTTATAAGTGAGAATTGAATCAATTTGGGTGTT
Arachis hypogaea cultivar Shitouqi chromosome A07.
CP030989.1:16599959-16599978
AGAGGAGTAGAGACGAAGAACAAAGATGAA16599959CATTTGGGGGTTAGGGTTTTATAAGTGAAAATTGGATCAATTTGGACATT
Arachis hypogaea cultivar Shitouqi chromosome A07.
CP030989.1:75793724-75793743
TGAAGAACATATCAAAACGATGAAGATGAA75793724CATTTGGGGGTTAGGGTTTTATTTTTATTTTTTATTAAGATACAATTAAA
Arachis hypogaea cultivar Shitouqi chromosome A09.
CP030991.1:21476148-21476167
CGAGGAGTGAAGACAAAAAACAAAGATGAA21476148CATTTGGGGGTTAGGGTTTTATAAGTGAAAATTGGATCAATTTAGGCATT
Arachis hypogaea cultivar Shitouqi chromosome B07.
CP030999.1:117373810-117373829
AGAGGAGTAGGGACGAAGAACAAAGATGAA117373810CATTTGGGGGTTAGGGTTTTATAAGTGTGAATGGATCAATTTGGGTATTT
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:61309230-61309249
GTAGTGAAGGGATTGGAAAATTTAGGGTTT61309230CATTTGGGGGTTAGGGTTTTGTGAATGAAATTAGGGATTTTGGGTTATTT
Arachis ipaensis cultivar K30076 chromosome 07.
CP049898.1:117859125-117859144
AGAGGAGTAGGGACGAAGAACAAAGATGAA117859125CATTTGGGGGTTAGGGTTTTATAAGTGTGAATGGATCAATTTGGGTATTT
Vitis rotundifolia cultivar Noble chromosome 2.
CP092927.1:8252356-8252375
TCTTGAACACGGATTTGTGAGTCTAGGATG8252356CATTTGGGGGTTAGGGTTTTGGTTTTTAGGTATCCACACTTTCCACCAGA
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141926.1:433259-433278
TGGAAAATTGGAGAAGGATTTAGGTTGCAC433259CATTTGGGGGTTAGGGTTTTTCAAGCTGGAGTTAGGCGAGAGAGATTTTC
Malus hybrid cultivar cultivar Flame chromosome 17.
CP141943.1:517406-517425
TGGAAAATTGGAGAAGGATTTAGGTCGCAC517406CATTTGGGGGTTAGGGTTTTTCAAGCTGGAGTTAGGCGAGAGAGATTTTC
Fraxinus pennsylvanica genome assembly, chromosome: 14.
OU503049.1:7405343-7405362
GGTTCAGTCTTCTTCTCTGTTGTGGGATGC7405343CATTTGGGGGTTAGGGTTTTGAAGTTAAATGACATGAGGCATTTTTAATT
Sherardia arvensis genome assembly, chromosome: 2.
OX415236.1:22601976-22601995
ACTTGGTCGGTGCCATCTTCCCGATGTGTT22601976CATTTGGGGGTTAGGGTTTTGCGAGATGTTGATTTGTGGGGTTTAGGGTT
Linaria vulgaris genome assembly, chromosome: 6.
OX415254.1:88092655-88092674
CCGGAGATTGGTGGTGGCTCGTCGGAGTAG88092655CATTTGGGGGTTAGGGTTTTGGAAAGAGGGGTTTATGGATCGATCAGATT
Sambucus nigra genome assembly, chromosome: 10.
OX422216.1:414073096-414073115
TTTTAATTTTTTTTATGTGTGCACATATTT414073096CATTTGGGGGTTAGGGTTTTTTAAAAAATTATATTCATGTTAAAATTTGT
Malus x robusta genome assembly, chromosome: 11.
OY720335.1:479304-479323
TGGAAAATTGGAGAAGGATTTAGGTTGCAC479304CATTTGGGGGTTAGGGTTTTTCAAGCTGGAGTTAGGCGAGAGAGATTTTC
Myrica gale genome assembly, chromosome: 7.
OZ005604.1:6184613-6184632
AGGGTCGCCAGTGGACTGTTGCTTCTGCCC6184613CATTTGGGGGTTAGGGTTTTTCAGAGCGGGAAAGGTGAGGGAGGAGGCGG
Eupithecia vulgata genome assembly, chromosome: 7.
OX297866.1:8005376-8005395
AGACCTGCTTAAATTTAAGAAGCGTTTGAG8005376CATTTGGGGGTTAGGGTTTTTAATCTAGATTTGAAGAAAATTTTGTTGTT
Sciurus vulgaris genome assembly, chromosome: 9.
LR738619.1:94927708-94927727
ATAATTATGTCTCCCTAAAATTTATTTGTT94927708AAAACCCTAACCCCCAAATGTGACTGCTTTTGAAGATGGAGTATTTAAAG
Balaenoptera acutorostrata genome assembly, chromosome: 3.
OX465352.1:52875955-52875974
TCATGTTTGGGTTCCCCAAATTCATTTGTT52875955AAAACCCTAACCCCCAAATGTGATAGTATTAGGGAGCTAATCTGATTTAG
Erinaceus europaeus genome assembly, chromosome: 2.
OX485811.1:141582353-141582372
TCTGCCTTAACCCACTCCAGTTCTTATGCC141582353AAAACCCTAACCCCCAAATGGGATGGTATTAAAATTTGGGGCCATTTTAG
Cyprinus carpio genome assembly, scaffold: 000002556.
LN592374.1:29926-29945
AAATTGAATCTTGTTTTTTCTTGTCTTCTA29926AAAACCCTAACCCCCAAATGATTCATTGGAAATTTCTACATTGGGTTTAC
Cyprinus carpio genome assembly, scaffold: 000011283.
LN592786.1:157942-157961
AAATTGAATCTTGTTTTTTCTTGTCTTCTA157942AAAACCCTAACCCCCAAATGATTCATTGGAAATTTCTACATTGGGTTTAC
CBTI4213.b1_J22.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusilla cDNA, mRNA sequence.
EY173532.1:249-268
ACCAAAATCTCAATCAGGTCCGGGAAACTC249AAAACCCTAACCCCCAAATGCAGCGTCTCAGCTTCCAGACCAGCTTCGCA
TSA: Fagopyrum esculentum Unigene88861_laojing mRNA sequence.
JW738484.1:14-33
ATTTAGGGCTAGA14AAAACCCTAACCCCCAAATGCAGCTTATCAGCATCGAGGCCAGCTTCACA
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC H094E22, *** SEQUENCING IN PROGRESS ***, 34 unordered pieces.
AC271196.1:116783-116802
GGAGTGGCTCCTTCAATGGGTCTTGCCTCT116783AAAACCCTAACCCCCAAATGCAGTCTCATCACCACACATGTGCAGAATTA
Vigna unguiculata subsp. unguiculata cultivar IT97K-499-35 clone BAC M009A18, *** SEQUENCING IN PROGRESS ***, 88 unordered pieces.
AC274584.1:113470-113489
GGAGTGGCTCCTTCAATGGGTCTTGCCTCT113470AAAACCCTAACCCCCAAATGCAGTCTCATCACCACACATGTGCAGAATTA
Arachis hypogaea cultivar Shitouqi chromosome A02.
CP030984.1:91387504-91387523
AATGTCCAAATTGATCCAATTTTCACTTAT91387504AAAACCCTAACCCCCAAATGTTTATCTTTGTTCTTCGTCTCTACTCATCT
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:61123079-61123098
AAATAACCCAAAATCCCTAATTTCATTCAC61123079AAAACCCTAACCCCCAAATGAAACCCTAAATTTTCCAATCCCTTCACTAC
Arachis hypogaea cultivar Shitouqi chromosome B10.
CP031002.1:133845953-133845972
AATACCCAAATTGATCCAATTCTCACCTAT133845953AAAACCCTAACCCCCAAATGTTCATTTTTATTCTTCGTCTCCACTCCTCT
Arachis hypogaea cultivar Shitouqi chromosome B10.
CP031002.1:137792450-137792469
AACGCCCAAATTGATCCAATTCTCACTTAT137792450AAAACCCTAACCCCCAAATGTTCATCTTTATTCTTTGTCTCCACTCCTCT
Vigna unguiculata cultivar Xiabao 2 chromosome Vu11.
CP039347.1:12398861-12398880
GGAGTGGCTCCTTCAATGGGTCTTGCCTCT12398861AAAACCCTAACCCCCAAATGCAGTCTCATCACCACACATGTGCAGAATTA
Arachis ipaensis cultivar K30076 chromosome 10.
CP049901.1:135625891-135625910
AATACCCAAATTGATCCAATTCTCACCTAT135625891AAAACCCTAACCCCCAAATGTTCATTTTTATTCTTCGTCTCCACTCCTCT
Arachis ipaensis cultivar K30076 chromosome 10.
CP049901.1:139606662-139606681
AACGCCCAAATTGATCCAATTCTCACTTAT139606662AAAACCCTAACCCCCAAATGTTCATCTTTATTCTTTGTCTCCACTCCTCT
Malus hybrid cultivar cultivar Royalty chromosome 17.
CP141969.1:33415706-33415725
GAAAATCTCTCTCGCCTAACTCCAGCTTGA33415706AAAACCCTAACCCCCAAATGGTGCAACCTAAATCCTTCTCCAATTTTCCA
Malus sylvestris genome assembly, chromosome: 17.
OU696519.1:33359227-33359246
GAAAATCTCTCTCGCCTAACTCCAGCTTGA33359227AAAACCCTAACCCCCAAATGGTGCGACCTAAATCCTTCTCCAATTTTCCA
Malus domestica genome assembly, chromosome: 17.
OU744558.1:34341022-34341041
GAAAATCTCTCTCGCCTAACTCCATCTTGA34341022AAAACCCTAACCCCCAAATGGTGCGACCTAAATCCTTCTCCAATTTTCCA
Myrica gale genome assembly, chromosome: 1.
OZ005598.1:24651299-24651318
CCGCCTCCTTCGTCACCTTTCCCGCTCTGA24651299AAAACCCTAACCCCCAAATGGGGCAGAAGCAACAGTCCACTGGCGACCCT
Myrica gale genome assembly, chromosome: 3.
OZ005600.1:23790616-23790635
CCGCCTCCTCCCTCACCTTTCCCGCTCTGA23790616AAAACCCTAACCCCCAAATGGGGCAGAAGCAACAGTCCACTGGCGACCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CATTTGGGGGTTAGGGTTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CATTTGGGGGTTAGGGTTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.107 | 0.099 | search_plus_done; http://172.18.8.135:50400/match?q=CATTTGGGGGTTAGGGTTTT&k=0&no_gap=0&offset=0&limit=50
0.229 | 0.122 | search_minus_done; http://172.18.8.135:50400/match?q=AAAACCCTAACCCCCAAATG&k=0&no_gap=0&offset=0&limit=33
0.243 | 0.014 | cgi_end;

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