GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 04:41:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mus musculus 18-day embryo cDNA, partial sequence, clone 1110032N20.
AV011611.1:188-207
TATGATGCTTTGATGGACTGTCACTGGCAG188CCCCTGGACATTGTATCTTCAGAGATCCCAGCTATGATGTAGCCAGGACG
Mus musculus 10-day embryo cDNA, partial sequence, clone 2610021C05.
AV113406.1:119-138
TACGATGCTTTGATGGACTGTCACTGGCAG119CCCCTGGACATTGTATCTTCAGAGATCCCAGCTATGATGTAGCCAGGACG
Brassica oleracea var. viridis mRNA, clone: KALE-098H16, 5' end sequence.
DK493214.1:660-679
AGAATCATCTTCATGCACTGTCTCGTCACC660CCCCTGGACATTGTATCTTCTCTTCTTTACTTACTGGGTTGTTTAGTAAA
BNBS8DCT_UP_030_G03_17APR2005_019 Brassica napus seeds BNBS8DCT Brassica napus cDNA 5', mRNA sequence.
EE460568.1:642-661
AGAATCATCTTCATGCACTGTCTCGTCACC642CCCCTGGACATTGTATCTTCTCTTCTTTACTTACTGGGTTGTTTAGTAAA
BNSCS2CT_UP_011_D11_07JAN2005_089 Brassica napus seed coat BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EE463507.1:645-664
AGAATCATCTTCATACACTGTCTCGTCATC645CCCCTGGACATTGTATCTTCTCTCTTCTTTACTTACTGGGTTGTTTAGTA
BNSCS3CT_UP_004_H02_07JAN2005_002 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE465285.1:545-564
AGAATCATCTTCATGCACTGTCTCGTCACC545CCCCTGGACATTGTATCTTCTCTTCTTTACTTACTGGGTTGTTTAGTAAA
24RDBNH_UP_038_H06_20FEB2004_034 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE506878.1:646-665
AGAATCATCTTCATACACTGTCTCGTCATC646CCCCTGGACATTGTATCTTCTCTCTTCTTTACTTACTGGGTTGTTTAGTA
BNQAR_UP_048_A12_31OCT2003_096 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
ES964330.1:92-111
AGAATCATCTTCATACACTGTCTCGTCATC92CCCCTGGACATTGTATCTTCTCTCTTCTTTACTTACTGGGTTGTTTAGTA
BNAEN3GH_UP_114_G10_15SEP2006_068 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV000971.1:642-661
AGAATCATCTTCATACACTGTCTCGTCATC642CCCCTGGACATTGTATCTTCTCTCTTCTTTACTTACTGGGTTGTTTAGTA
BNSCS2CT_UP_130_G05_21APR2007_035 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV025243.1:655-674
AGAATCATCTTCATGCACTGTCTCGTCACC655CCCCTGGACATTGTATCTTCTCTTCTTTACTTAC
BNSCS3CT_UP_211_H11_13MAY2007_081 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV053614.1:637-656
AGAATCATCTTCATACACTGTCTCGTCATC637CCCCTGGACATTGTATCTTCTCTCTTC
BNSCS3CT_UP_241_C10_17MAY2007_076 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV056026.1:662-681
AGAATCATCTTCATGCACTGTCTCGTCACC662CCCCTGGACATTGTATCTTCTCTTCTTTACTTACTGGGTTGTTTAGTAAA
BNSCS4CT_UP_072_C04_18MAY2007_028 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV063836.1:666-685
AGAATCATCTTCATGCACTGTCTCGTCACC666CCCCTGGACATTGTATCTTCTCTTCTTTACTTACTGGGTTGT
0157680 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV174014.1:614-633
AGAATCATCTTCATACACTGTCTCGTCATC614CCCCTGGACATTGTATCTTCTCTCTTCTTTACTTACTTGGTTGTTTAGTA
BN18DYSC_UP_191_B10_4APR2008_078 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG569220.1:308-327
AGAATCATCTTCATACACTGTCTCGTCATC308CCCCTGGACATTGTATCTTCTCTCTTCTTTACTTACTGGGTTGTTTAGTA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:7905487-7905506
AGAATCATCTTCATGCACTGTCTCGTCACC7905487CCCCTGGACATTGTATCTTCTCTTCTTTACTTACTGGGTTGTTTAGTAAA
0190057 Brassica napus Apical meristem Brassica napus cDNA, mRNA sequence.
EV092671.1:179-198
TACTAAACAACCCAGTAAGTAAAGAAGAGA179GAAGATACAATGTCCAGGGGGATCCTGTTCACGCGGATGTTCTCTTCGGT
0152766 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV171761.1:222-241
TACTAAACAACCCAGTAGGTAAAGAAGAGA222GAAGATACAATGTCCAGGGGGATGACGAGACAGTGTATGAAGATGATTCT
0157660 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV174004.1:167-186
TACTAAACAACCCAGTAAGTAAAGAAGAGA167GAAGATACAATGTCCAGGGGGATGACGAGACAGTGTATGAAGATGATTCT
BNAPO3GH_T3_009_A02_13JULY2007_016 BNAPO3GH Brassica napus cDNA 5', mRNA sequence.
GR456504.1:192-211
TACTAAACAACCCAGTAAGTAAAGAAGAGA192GAAGATACAATGTCCAGGGGGATGACGAGACAGTGTATGAAGATGATTCT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:63244278-63244297
TACTAAACAACCCAGTAAGTAAAGAAGAGA63244278GAAGATACAATGTCCAGGGGGATGACGAGACAGTGTATGAAGATGATTCT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:47094872-47094891
TACTAAACAACCCAGTAAGTAAAGAAGAGA47094872GAAGATACAATGTCCAGGGGGATGACGAGACAGTGTATGAAGATGATTCT
Brassica napus genome assembly, chromosome: C08.
HG994372.1:33862300-33862319
TTTACTAAACAACCCAGTAAGTAAAGAAGA33862300GAAGATACAATGTCCAGGGGGGTGACGAGACAGTGCATGAAGATGATTCT
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:43150228-43150247
TTTACTAAACAACCCAGTAAGTAAAGAAGA43150228GAAGATACAATGTCCAGGGGGGTGACGAGACAGTGCATGAAGATGATTCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CCCCTGGACATTGTATCTTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CCCCTGGACATTGTATCTTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.849 | 0.840 | search_plus_done; http://172.18.8.135:50400/match?q=CCCCTGGACATTGTATCTTC&k=0&no_gap=0&offset=0&limit=50
1.185 | 0.336 | search_minus_done; http://172.18.8.135:50400/match?q=GAAGATACAATGTCCAGGGG&k=0&no_gap=0&offset=0&limit=34
1.190 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).