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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 05:46:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141954.1:29979040-29979060
TCCTCTCAAGCTCATTAACATCCAATTCGT29979040CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATGCTCTGGGGCTG
Malus hybrid cultivar cultivar Royalty chromosome 2.
CP141971.1:30279260-30279280
TCCTCTCAAGCTCATTAACATCCAATTCGT30279260CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATGCTCTGGGGCTG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143359.1:32753267-32753287
TCCTCTCAAGCTCATTAACATCCAATTCGT32753267CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATTCTCTGGGGCTG
Malus hybrid cultivar cultivar SH6 chromosome 2.
CP143376.1:31011739-31011759
TCCTCTCAAGCTCATTAACATCCAATTCGT31011739CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATGCTCTGGGGCTG
Malus sylvestris genome assembly, chromosome: 2.
OU696504.1:32386279-32386299
TCCTCTCAAGCTCATTAACATCCAATTCGT32386279CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATTCTCTGGGGCTG
Malus domestica genome assembly, chromosome: 2.
OU744543.1:32252800-32252820
TCCTCTCAAGCTCATTAACATCCAATTCGT32252800CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATTCTCTGGGGCTG
Malus domestica genome assembly, chromosome: 2.
OU744954.1:32035116-32035136
TCCTCTCAAGCTCATTAACATCCAATTCGT32035116CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATTCTCTGGGGCTG
Malus domestica genome assembly, chromosome: 2.
OU744992.1:32586683-32586703
TCCTCTCAAGCTCATTAACATCCAATTCGT32586683CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATTCTCTGGGGCTG
Pyrus communis genome assembly, chromosome: 10.
OY757077.1:23210455-23210475
TCCTCTCAAGCTCATTAACATCCAATTCGT23210455CGTCACTATCATCCTCCTCCACTGTTGCCTCTGGGTCATGCTCTGGGGCTG
Zea mays cultivar LT2357 chromosome 1.
CP116739.1:52261413-52261433
ACTGCTTTGTGGCGTTCCCGCCGTTTGACG52261413TGGAGGAGGATGATAGTGACGAAGGGGCCCTTTGTTGCGCTGCCCGCATGA
Malus hybrid cultivar cultivar Flame chromosome 2.
CP141911.1:5680303-5680323
CATCCCCAGAGCATGACCCAGAGGCAACAG5680303TGGAGGAGGATGATAGTGACGACGAATTGGATGTTAATGAGCTTGAGAGGA
Agrostemma githago genome assembly, chromosome: 13.
OY288251.1:71115821-71115841
TTAGTGTATCGATGGTGGAGTTGATTTTGA71115821TGGAGGAGGATGATAGTGACGAAGGTGGTAACCAAAGACAAAGAAGAGAAA
Malus x robusta genome assembly, chromosome: 7.
OY720331.1:5700749-5700769
CAGCCCCAGAGCATGACCCAGAGGCAACAG5700749TGGAGGAGGATGATAGTGACGACGAATTGGATGTTAATGAGCTTGAGAGGA
Crataegus laevigata genome assembly, chromosome: 5.
OY756942.1:6565457-6565477
CAGCCCCAGAGCATGACCCAGAGGCAACAG6565457TGGAGGAGGATGATAGTGACGACGAATTGGATGTTAATGAGCTTGAGAGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CGTCACTATCATCCTCCTCCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CGTCACTATCATCCTCCTCCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.098 | 0.089 | search_plus_done; http://172.18.8.135:50400/match?q=CGTCACTATCATCCTCCTCCA&k=0&no_gap=0&offset=0&limit=50
0.121 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=TGGAGGAGGATGATAGTGACG&k=0&no_gap=0&offset=0&limit=41
0.124 | 0.003 | cgi_end;

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