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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-08 01:55:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

OL3871F Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3871, mRNA sequence.
EH419335.1:692-711
CTTCTGCTTCCACACCCGACAGATCTGGAT692CTCGACACTTTCCTCTCGCTCGG
0208441 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV142509.1:575-594
CTTCTGCTTCCACACCCGACCGATCTGGAT575CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCACAACGTTGGG
0081169 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV157307.1:80-99
CTTCTGCTTCCACACCCGACCGATCTGGAT80CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCACAACGTTGGG
RS3DM81JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence.
EY943902.1:632-651
CTTCTGCTCCCACACCCAACGGATCTGGAT632CTCGACACTTTCCTCTCGCTCGGTGGAACCACAACGTTGGGGCTTCCATC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_13196.
FX700022.1:656-675
CTTCTGCTTCCACACCCGACAGATCTGGAT656CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCGCAACGTTGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_45061.
FX735581.1:533-552
CTTCTGCTTCCACACCCGACAGATCTGGAT533CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCACAACGTTGGG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_20238.
FX791788.1:660-679
CTTCTGCTCCCACACCCAACGGATCTGGAT660CTCGACACTTTCCTCTCGCTCGGTGGAACCACAACGTTGGGGCTTCCATC
TSA: Pachycladon fastigiatum 25550_844_6989_7_41.Pafaleaf mRNA sequence.
JR007857.1:319-338
CTTCTGCTTCCACACCCAACAGATCTAGAT319CTCGACACTTTCCTCTCGCTTGGTGTGACTTCAATGTTAGGACTTCCATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' linkage group A02 clone KBrB061A20, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces.
AC234720.1:61246-61265
CTTCTGCTTCCACACCCGACAGATCTGGAT61246CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGTAGCCGCAACGTTGGG
Brassica napus genome assembly, chromosome: C07.
HG994371.1:41814214-41814233
CTTCTGCTTCCACACCCGACAGATCTGGAT41814214CTCGACACTTTCCTCTCGCTCGGTGGTGCTGCTGCAACGTTGGGGCTTCC
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:44740050-44740069
CTTCTGCTTCCACACCCGACAGATCTGGAT44740050CTCGACACTTTCCTCTCGCTCGGCGGTGCTGCCGCAACGTTGGGGCTTCC
Raphanus sativus genome assembly, chromosome: 2.
LR778311.1:42561797-42561816
CTTCTGCTCCCACACCCAACGGATCTGGAT42561797CTCGACACTTTCCTCTCGCTCGGTGGAACCACAACGTTGGGGCTTCCATC
4ETGS72H_UP_001_G06_16MAY2003_018 Brassica napus 4ETGS72h Brassica napus cDNA 5', mRNA sequence.
CN726917.1:62-81
CCCAACGTTGTGGCTACAGCAGCACCACCG62AGCGAGAGGAAAGTGTCGAGATCCAGATCGGTCGGGTGTGGAAGCAGAAG
Brassica oleracea var. viridis mRNA, clone: KALE-076N13, 3' end sequence.
DK544522.1:83-102
CCCAACGTTGTGGCTACAGTAGCAACACTG83AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica oleracea var. viridis mRNA, clone: KALE-147D05, 3' end sequence.
DK571400.1:157-176
CCCAACGTTGTGGCTACAGTAGCAACACTG157AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
OL3871R Brassica oleracea var. alboglabra leaf cDNA library Brassica oleracea var. alboglabra cDNA clone OL3871, mRNA sequence.
EH419339.1:76-95
GGAAGCCCCAACGTTGCGGCAGCACCGCCG76AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
BNSCS2CT_UP_145_E09_23APR2007_071 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV026484.1:252-271
CCCAACGTTGTGGCTACAGCAGCACCACCG252AGCGAGAGGAAAGTGTCGAGATCCAGATCGGTCGGGTGTGGAAGCAGAAG
BNSCS2CT_UP_212_B01_28APR2007_013 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV031260.1:630-649
CCCAACGTTGTGGCTACAGCAGCACCACCG630AGCGAGAGGAAAGTGTCGAG
0208653 Brassica napus Very early anther Brassica napus cDNA, mRNA sequence.
EV142721.1:422-441
CCCAACGTTGTGGCTACAGCAGCACCACCG422AGCGAGAGGAAAGTGTCGAGATCCAGATCGGTCGGGTGTGGAAGCAGAAG
BR030979 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-003G04 5', mRNA sequence.
EX046335.1:181-200
CCCAACGTTGCGGCTACAGCAGCACCACCG181AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
BR110526 etiolated mature leaf cDNA library KHLW Brassica rapa subsp. pekinensis cDNA clone KHLW-16D08 5', mRNA sequence.
EX126696.1:421-440
CCCAACGTTGCGGCTACAGCAGCACCACCG421AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
RS1CE40TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX889232.1:53-72
GATGGAAGCCCCAACGTCGTGGTTCCACCG53AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
RS3EA05TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY950247.1:28-47
GGGAAGCCCCAACGTTGTGGTCCACCG28AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
BNAOV1GH_T3_062_F01_14SEPT2007_005 BNAOV1GH Brassica napus cDNA 5', mRNA sequence.
GR447075.1:68-87
GGAAGCCCCAACGTTGCGGCAGCACCGCCG68AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_1135.
FX660123.1:991-1010
GATGGAAGCCCCAACGTTGTGGTTCCACCG991AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
TSA: Raphanus sativus RS28303 mRNA sequence.
JT812850.1:468-487
GATGGAAGCCCCAACGTTGTGGTTCCACCG468AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:54543408-54543427
CCCAACGTTGCGGCTACAGCAGCACCACCG54543408AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica napus cultivar Xiang5A chromosome 19.
CP123894.1:14103281-14103300
CCCAACGTTGTGGCTACAGTAGCAACACTG14103281AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica napus genome assembly, chromosome: A06.
HG994360.1:39555591-39555610
GGGAGCCCCAACGTTGCGGCAGCACCACCG39555591AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica rapa genome, scaffold: A06.
LR031569.1:49610069-49610088
CCCAACGTTGCGGCTACAGCAGCACCACCG49610069AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:53227323-53227342
CCCAACGTTGCGGCTACAGCAGCACCACCG53227323AGCGAGAGGAAAGTGTCGAGATCCAGATCTGTCGGGTGTGGAAGCAGAAG
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:11088704-11088723
GATGGAAGCCCCAACGTTGTGGTTCCACCG11088704AGCGAGAGGAAAGTGTCGAGATCCAGATCCGTTGGGTGTGGGAGCAGAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTCGACACTTTCCTCTCGCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTCGACACTTTCCTCTCGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.594 | 0.586 | search_plus_done; http://172.18.8.135:50400/match?q=CTCGACACTTTCCTCTCGCT&k=0&no_gap=0&offset=0&limit=50
2.103 | 1.509 | search_minus_done; http://172.18.8.135:50400/match?q=AGCGAGAGGAAAGTGTCGAG&k=0&no_gap=0&offset=0&limit=38
2.117 | 0.013 | cgi_end;

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