GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 03:37:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Mobula hypostoma genome assembly, chromosome: 14.
OY992605.1:39573683-39573702
GAAACTAAGTTAGCATTTTTGGTCACTTCA39573683CTTGGAGAAGGTGTTGGAAGGGTCAATTAGAACAGTTCCCGAGATGATAG
110f06 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN960828.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
117c11 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN961356.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
221e01w longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965077.1:78-97
TGTGAAGAAGGTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
1f4 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965619.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
302d3 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN965995.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
8f08 longbai no.2 one month old leaves Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN966403.1:16-35
CGCAGATCCCTCAAC16CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNDH4DCT_UP_008_F04_17DEC2004_022 Brassica napus seeds BNDH4DCT Brassica napus cDNA 5', mRNA sequence.
DY005585.1:93-112
TGTGAAGAAGGTGGACGCAGATCCCTCAAC93CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
19ACACYS_UP_025_C03_29OCT2004_027 Brassica napus 19ACACYS Brassica napus cDNA 5', mRNA sequence.
DY008361.1:139-158
TGTGAAGAAGGTGGACGCAGATCCCTCAAC139CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
8RDBRH_UP_007_B12_12SEP2003_094 Brassica rapa - 8RDBRH Brassica rapa cDNA 5', mRNA sequence.
DY009312.1:125-144
TGTGAAGAAGGTGGGCGCAGATCCCTCAAC125CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
16ACDHDS_UP_021_G08_26OCT2004_052 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
EE403333.1:201-220
TGTGAAGAAGGTGGACGCAGATCCCTCAAC201CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
32ETGS24_UP_005_G01_11MAR2004_003 Brassica napus 32ETGS24 Brassica napus cDNA 5', mRNA sequence.
EE425898.1:70-89
TGTGAAGAAGGTGGACGCAGATCCCTCAAC70CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNSCS3CT_UP_004_D12_07JAN2005_090 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE465255.1:55-74
TGTGAAGAAGGTGGACGCAGATCCCTCAAC55CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
37RDBRH_UP_012_E02_29MAR2004_008 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE523132.1:109-128
TGTGAAGAAGGTGGACGCAGATCCCTCAAC109CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
37RDBRH_UP_034_A11_05JUL2004_095 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE524824.1:106-125
TGTGAAGAAGGTGGACGCAGATCCCTCAAC106CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
37RDBRH_UP_065_H01_05DEC2005_001 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE527023.1:62-81
TGTGAAGAAGGTGGACGCAGATCCCTCAAC62CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNZB_UP_164_B04_29SEP2005_030 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE568461.1:152-171
TGTGAAGAAGGTGGACGCAGATCCCTCAAC152CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BMSB01-T7-02-C11 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG019421.1:93-112
TGTGAAGAAGGTGGACGCAGATCCCTCAAC93CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
26RDBNT_UP_101_D06_09MAR2006_042 Brassica napus 26RDBNT Brassica napus cDNA 5', mRNA sequence.
ES928256.1:62-81
TGTGAAGAAGGTGGACGCAGATCCCTCAAC62CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
9RDBNGA_UP_222_G04_05NOV2006_020 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES962061.1:140-159
TGTGAAGAAGGTGGACGCAGATCCCTCAAC140CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
44JK5DM_UP_037_D10_01JUL2006_074 Brassica napus 44JK5DM Brassica napus cDNA 5', mRNA sequence.
ES985198.1:29-48
GGAAGAAGGTGGACGCAGATCCCTCAAC29CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNAEN3GH_UP_020_A07_23JUN2006_063 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES994133.1:137-156
TGTGAAGAAGGTGGACGCAGATCCCTCAAC137CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNSCS1CT_UP_126_D06_20APR2007_042 Brassica napus BNSCS1CT Brassica napus cDNA 5', mRNA sequence.
EV018310.1:91-110
TGTGAAGAAGGTGGACGCAGATCCCTCAAC91CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNSCS2CT_UP_190_G05_27APR2007_035 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV029689.1:90-109
TGTGAAGAAGGTGGACGCAGATCCCTCAAC90CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNSCS3CT_UP_172_B06_12MAY2007_046 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV050410.1:69-88
TGTGAAGAAGGTGGACGCAGATCCCTCAAC69CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNSCS4CT_UP_152_E07_22MAY2007_055 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV070147.1:63-82
TGTGAAGAAGGTGGACGCAGATCCCTCAAC63CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BNSCS5CT_UP_128_H11_30MAY2007_081 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV087013.1:87-106
TGTGAAGAAGGTGGACGCAGATCCCTCAAC87CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
0168219 Brassica napus Flower Brassica napus cDNA, mRNA sequence.
EV133478.1:76-95
TCCGAAGAAGGTGGACGCAGATCCCTCAAC76CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RR1B780TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EV528285.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS3AB67TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW732629.1:130-149
TCTCAAGAAGCTGGACGCAGATCCCTCAAC130CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS3AP07TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EW733026.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BR002210 light-chilled whole plant cDNA library KBCD Brassica rapa subsp. pekinensis cDNA clone KBCD-005E04 5', mRNA sequence.
EX017566.1:22-41
CGTGGACGCAGATCCCTCAAC22CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
BR062537 silique cDNA library KBSP Brassica rapa subsp. pekinensis cDNA clone KBSP-012F12 5', mRNA sequence.
EX077893.1:104-123
TGTGAAGAAGGTGGACGCAGATCCCTCAAC104CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
BR088643 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-008F03 5', mRNA sequence.
EX102353.1:401-420
TGTGAAGAAGGTGGACGCAGATCCCTCAAC401CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
BR106889 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-16H08 5', mRNA sequence.
EX123059.1:81-100
TGTGAAGAAGGTGGACGCAGATCCCTCAAC81CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
RR1CB42TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX748402.1:72-91
TCTCAAGAAGCTGGACGCAGATCCCTCAAC72CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RR2BY52TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EX755255.1:132-151
TCTCAAGAAGTTGGACGCAGATCCCTCAAC132CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS1CT15TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX890447.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS2C371TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896209.1:121-140
TCTCAAGAAGCTGGACGCAGATCCCTCAAC121CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS3C986TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX904558.1:122-141
TCTCAAGAAGCTGGACGCAGATCCCTCAAC122CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS3CD49TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EX904874.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RR2DY76TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EY907693.1:81-100
TCTCAAGAAGTTGGACGCAGATCCCTCAAC81CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RR4ED15TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EY925371.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS1DT87TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EY932123.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS2DL79TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY938611.1:123-142
TCTCAAGAAGCTGGACGCAGATCCCTCAAC123CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS2EA76TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EY940773.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS3DK42TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence.
EY947928.1:57-76
TCTCAAGAAACTGGACGCAGATCCCTCAAC57CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RR1F259TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD534025.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RS2GT73TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD948013.1:78-97
TCTCAAGAAGCTGGACGCAGATCCCTCAAC78CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
RR2GJ84TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
FD971909.1:133-152
TCTCAAGAAGTTGGACGCAGATCCCTCAAC133CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
BN18DYSC_UP_043_C03_20FEB2008_027 BN18DYSC Brassica napus cDNA 5', mRNA sequence.
FG556635.1:141-160
TGTGAAGAAGGTGGACGCAGATCCCTCAAC141CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
UCDJRBES23180 Juglans regia MboI library Juglans regia genomic clone JM022E04, genomic survey sequence.
HR215444.1:556-575
CAACAAGTGTTGGACAGATCATATGGAGCA556CTTGGAGAAGGTGTTGGAAGTGTTACAGAAAAATCAGTTGTACGTAAAAC
Rattus norvegicus clone CH230-177A24, WORKING DRAFT SEQUENCE, 3 unordered pieces.
AC127133.4:112442-112461
TATGTATGGTCTTGTCAGGAGAACCAGCCA112442CTTGGAGAAGGTGTTGGAAGGTCCAGATGCACATTGCTACCCCGGGAGCA
Brassica rapa subsp. pekinensis clone KBrH071G03, complete sequence.
FP236364.1:21925-21944
TGTGAAGAAGGTGGACGCAGATCCCTCAAC21925CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
Brassica rapa subsp. pekinensis clone KBrB009D15, complete sequence.
FP340608.1:18107-18126
TGTGAAGAAGGTGGACGCAGATCCCTCAAC18107CTTGGAGAAGGTGTTGGAAGACTTGAAATCTGACGAATCAAACCGTAACA
Brassica napus cultivar Xiang5A chromosome 10.
CP123885.1:60000718-60000737
TGTGAAGAAGGTGGACGCAGATCCCTCAAC60000718CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Brassica napus genome assembly, chromosome: A06.
HG994360.1:44794874-44794893
TGTGAAGAAGGTGGACGCAGATCCCTCAAC44794874CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Brassica rapa genome, scaffold: A06.
LR031569.1:54880202-54880221
TGTGAAGAAGGTGGACGCAGATCCCTCAAC54880202CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Brassica rapa genome assembly, chromosome: A06.
LS974622.2:58544484-58544503
TGTGAAGAAGGTGGACGCAGATCCCTCAAC58544484CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:19403243-19403262
TCTCAAGAAGCTGGACGCAGATCCCTCAAC19403243CTTGGAGAAGGTGTTGGAAGAATTGAAATCTGACGAATCAAACCGTAACA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/CTTGGAGAAGGTGTTGGAAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : CTTGGAGAAGGTGTTGGAAG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
2.658 | 2.650 | search_plus_done; http://172.18.8.135:50400/match?q=CTTGGAGAAGGTGTTGGAAG&k=0&no_gap=0&offset=0&limit=50
2.715 | 0.057 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCCAACACCTTCTCCAAG&k=0&no_gap=0&offset=0&limit=0
2.715 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).