GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-17 05:53:38, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

010421AASA005600HT (AASA) Royal Gala 10 DAFB fruit Malus domestica cDNA clone AASA005600, mRNA sequence.
CN879102.1:285-306
TTGTTAAACTTCCTGTGTTTAGGATCTTAA285GAACCACATCCGTCATAAAGGTTTCTGTAACCCTTTCGCGAATGAAAAGTAC
Mdfrt3093m22.y2 Mdfrt Malus domestica cDNA clone Mdfrt3093m22 5', mRNA sequence.
CV466577.1:218-239
TTGTTAAACTTCCTGTGTTTAGGATCTTAA218GAACCACATCCGTCATAAAGGTTTCTGTAACCCTTTCGCGAATGAAAAGTAC
Mdfrt3118g11.y1 Mdfrt Malus domestica cDNA clone Mdfrt3118g11 5' similar to TR:Q9SV27 Q9SV27 HYPOTHETICAL 262.6 KD PROTEIN, mRNA sequence.
CV794459.1:573-594
TTGTTAAACTTCCTGTGTTTAGGATCTTAA573GAACCACATCCGTCATAAAGGTTTCTGTAACCCTTTCGCGA
fl_03C10_AD11 Md_fruit-leaf_subtractive_cDNA_library Malus domestica cDNA, mRNA sequence.
GD254882.1:45-66
TTGTTAAACTTCCTGTGTTTAGGATCTTAA45GAACCACATCCGTCATAAAGGTTTCTGTAACCCTTTCGCGAATGAAAAGT
Mdfrg3156B15.g1 Apple_EST_Mdfrg Malus domestica cDNA 5' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein [Arab
GO523895.1:442-463
TTGTTAAACTTCCTGTGTTTAGGATCTTAA442GAACCACATCCGTCATAAAGGTTTCTGTAACCCTTTCGCGAATGAAAAGTAC
Malus x robusta genome assembly, chromosome: 12.
OY720336.1:1730544-1730565
TTGTTAAACTTCCTGTGTTTAGGATCTTAA1730544GAACCACATCCGTCATAAAGGTTTCTGTAACCCTTTCGCGAATGAAAAGTAC
Mdfrt3031F08_e8256.g1 Mdfrt Malus domestica cDNA 5' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein [Arabidop
GO559733.1:157-178
GTACTTTTCATTCGCGAAAGGGTTACAGAA157ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Mdfrs3141M06_e7965.b1 Apple_EST_Mdfrs Malus domestica cDNA 3' similar to ref|NP_200128.1| expressed protein [Arabidopsis thaliana] dbj|BAB08419.1| gene_id:MFH8.10 pir|T02893 similar to unknown protein
GO567457.1:122-143
GTACTTTTCATTCGCGAAAGGGTTACAGAA122ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141910.1:42505618-42505639
GTACTTTTCATTCGCGAAAGGGTTACAGAA42505618ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus hybrid cultivar cultivar Flame chromosome 1.
CP141927.1:31997894-31997915
GTACTTTTCATTCGCGAAAGGGTTACAGAA31997894ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTTAACA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141953.1:30247083-30247104
GTACTTTTCATTCGCGAAAGGGTTACAGAA30247083ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus hybrid cultivar cultivar Royalty chromosome 1.
CP141970.1:32016230-32016251
GTACTTTTCATTCGCGAAAGGGTTACAGAA32016230ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143358.1:31627364-31627385
GTACTTTTCATTCGCGAAAGGGTTACAGAA31627364ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus hybrid cultivar cultivar SH6 chromosome 1.
CP143375.1:30021939-30021960
GTACTTTTCATTCGCGAAAGGGTTACAGAA30021939ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus sylvestris genome assembly, chromosome: 1.
OU696503.1:28466407-28466428
GTACTTTTCATTCGCGAAAGGGTTACAGAA28466407ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus domestica genome assembly, chromosome: 1.
OU696677.1:28451466-28451487
GTACTTTTCATTCGCGAAAGGGTTACAGAA28451466ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus domestica genome assembly, chromosome: 1.
OU744542.1:32191086-32191107
GTACTTTTCATTCGCGAAAGGGTTACAGAA32191086ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus domestica genome assembly, chromosome: 1.
OU744953.1:31787488-31787509
GTACTTTTCATTCGCGAAAGGGTTACAGAA31787488ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA
Malus domestica genome assembly, chromosome: 1.
OU744991.1:28703084-28703105
GTACTTTTCATTCGCGAAAGGGTTACAGAA28703084ACCTTTATGACGGATGTGGTTCTTAAGATCCTAAACACAGGAAGTTTAACAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAACCACATCCGTCATAAAGGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAACCACATCCGTCATAAAGGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.457 | 0.448 | search_plus_done; http://172.18.8.135:50400/match?q=GAACCACATCCGTCATAAAGGT&k=0&no_gap=0&offset=0&limit=50
0.720 | 0.263 | search_minus_done; http://172.18.8.135:50400/match?q=ACCTTTATGACGGATGTGGTTC&k=0&no_gap=0&offset=0&limit=44
0.728 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).