GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-16 15:43:30, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cuc2_2_B06 Cucumber fruit development cDNA library Cucumis sativus cDNA, mRNA sequence.
DN909636.1:142-165
ATCATAATACAATCCCACCCTTCTTCTCTC142GAATTCAAAAGCATTTCAAAACTAATAGAATCCAAAAAAGGAAAAAAGAAAAAA
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_2239, mRNA sequence.
JW920408.1:307-330
ATCATAATACAATCCCACCCTTCTTCTCTC307GAATTCAAAAGCATTTCAAAACTAATAGAATCCAAAAAAGGAAAAAGAAAAAAA
TSA: Cucumis sativus var. sativus cultivar Vlaspik CuSa200910_11705, mRNA sequence.
JW929865.1:98-121
ATCATAATACAATCCCACCCTTCTTCTCTC98GAATTCAAAAGCATTTCAAAACTAATAGAATCCAAAAAAGGAAAAAGAAAAAAA
hsxa0_0004_B09.ab1 cucumber stamen suppression subtractive hybridization Cucumis sativus cDNA, mRNA sequence.
GO897533.1:63-86
TTTTTTCTTTTTTCCTTTTTTGGATTCTAT63TAGTTTTGAAATGCTTTTGAATTCGAGAGAAGAAGGGTGGGATTGTATTATGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAATTCAAAAGCATTTCAAAACTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAATTCAAAAGCATTTCAAAACTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.181 | 0.173 | search_plus_done; http://172.18.8.135:50400/match?q=GAATTCAAAAGCATTTCAAAACTA&k=0&no_gap=0&offset=0&limit=50
0.278 | 0.096 | search_minus_done; http://172.18.8.135:50400/match?q=TAGTTTTGAAATGCTTTTGAATTC&k=0&no_gap=0&offset=0&limit=47
0.278 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).