GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 02:26:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Psittacula echo genome assembly, chromosome: 3.
OY725422.1:38140143-38140162
GCCCACAGGGAAAAGCTTGTGTTTGGCCAG38140143GAGAAGTTGGCTTCAGTGCCTGCTATATATAAGAACCAAAGTGAACCAAA
00250 MtRHE Medicago truncatula cDNA 5' similar to 60s acidic ribosomal protein P2, mRNA sequence.
AA660377.1:209-228
GATTTTGCCGAGCTAATTGCTAGTGGCAGA209GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
00792 MtRHE Medicago truncatula cDNA 5' similar to 60S acidic ribosomal protein P2, mRNA sequence.
AA660895.1:209-228
GATTTTGCCGAGCTAATTGCTAGTGGCAGA209GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
Medicago truncatula EST MtBB56A12F1 : T3 end of clone MtBB56A12 of cDNA library MtBB from symbiotic root nodules of cultivar Jemalong of Medicago truncatula (barrel medic).
AL381017.1:107-126
GATTTTGCCGAGCTAATTGCTAGTGGCAGA107GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
M110889e GVSN Medicago truncatula cDNA clone SN196, mRNA sequence.
AW208236.2:224-243
GATTTTGCCGAGCTAATTGCTAGTGGCAGA224GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
NF028F06LF1F1047 Developing leaf Medicago truncatula cDNA clone NF028F06LF 5', mRNA sequence.
BE315942.2:209-228
GATTTTGCCGAGCTAATTGCTAGTGGCAGA209GAGAAGTTGGCTTCAGTGCCTTCTGGTG
EST432840 KV1 Medicago truncatula cDNA clone pKV1-17K2, mRNA sequence.
BF004342.1:177-196
GATTTTGCCGAGCTAATTGCTAGTGGCAGA177GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
NF110B10PL1F1089 Phosphate starved leaf Medicago truncatula cDNA clone NF110B10PL 5', mRNA sequence.
BI263878.1:266-285
GATTTTGCCGAGCTAATTGCTAGTGGCAGA266GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
Bruguiera gymnorhiza mRNA, clone: Bg04-12_N08, 5'-end, expressed in roots.
BP946659.1:127-146
GATATCACTGAGCTTATTGCTGCTGGCAGG127GAGAAGTTGGCTTCAGTGCCTGCCGGTGGTGGTGCTGTGGCTGCTGTTGC
Bruguiera gymnorhiza mRNA, clone: Bg04-28_B14, 5'-end, expressed in roots.
BP949230.1:260-279
GATATCACTGAGCTTATTGCTGCTGGCAGG260GAGAAGTTGGCTTCAGTGCCTGCCGGTGGTGGTGCTGTGGCTGCTGTTGC
RR6nr070 Thlaspi caerulescens roots cDNA library 10 microM ZnSO4 Noccaea caerulescens cDNA, mRNA sequence.
DN923693.1:181-200
GACGTGGCTGAGCTAATTGCTGCCGGAAGC181GAGAAGTTGGCTTCAGTGCCGTCCGGTGGTGGTGGGGTTGCCATGGCTTC
RS5nr051 Thlaspi caerulescens shoots cDNA library 10 microM ZnSO4 Noccaea caerulescens cDNA, mRNA sequence.
DN926017.1:3-22
GC3GAGAAGTTGGCTTCAGTGCCGTCCGGTGGTGGTGGGGTTGCCATGGCTTC
MTYEO22TF JCVI-MT1 Medicago truncatula cDNA 5', mRNA sequence.
EV261824.1:238-257
GATTTTGCCGAGCTAATTGCTAGTGGCAGA238GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
ALF-R-6_2007-07-18_1/ALF(R)-6_B22_048_1 Alfalfa (Medicago sativa) Trichome isolated from the stem Medicago sativa cDNA, mRNA sequence.
EX525779.1:255-274
GATTTTGCTGAGCTAATTGCTAGTGGCAGA255GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTGGCTGCTGCTGC
Aeschynomene indica mRNA 5-prime sequence from clone ADL0AAA11YC24 (ADL0AAA11YC24CM1).
FO986978.1:262-281
GATATCACCGAGCTAATTGCTAGCGGAAGA262GAGAAGTTGGCTTCAGTGCCTAGTGGCGGTGGCGCTGCTGCTGTTGCTGC
Aeschynomene indica mRNA 5-prime sequence from clone ADL0ABA19YF02 (ADL0ABA19YF02CM1).
FO987454.1:262-281
GATATCACCGAGCTAATTGCTAGCGGAAGA262GAGAAGTTGGCTTCAGTGCCTAGTGGCGGTGGCGCTGCTGCTGTTGCTGC
Aeschynomene indica mRNA 5-prime sequence from clone ADL0ABA13YC24 (ADL0ABA13YC24CM1).
FO989654.1:266-285
GATATCACCGAGCTAATTGCTAGCGGAAGA266GAGAAGTTGGCTTCAGTGCCTAGTGGCGGTGGCGCTGCTGCTGTTGCTGC
Aeschynomene indica mRNA 5-prime sequence from clone ADL0ABA3YH08 (ADL0ABA3YH08CM1).
FO995478.1:251-270
GATATCACCGAGCTAATTGCTAGCGGAAGA251GAGAAGTTGGCTTCAGTGCCTGGTGGTGGTGGCGCTGCTGCTGTTGCTGC
Aeschynomene indica mRNA 5-prime sequence from clone ADL0ABA2YL18 (ADL0ABA2YL18CM1).
FO995739.1:262-281
GATATCACCGAGCTAATTGCTAGCGGAAGA262GAGAAGTTGGCTTCAGTGCCTAGTGGCGGTGGCGCTGCTGCTGTTGCTGC
Aeschynomene indica mRNA 5-prime sequence from clone ADL0ABA21YP04 (ADL0ABA21YP04CM1).
FO998141.1:262-281
GATATCACCGAGCTAATTGCTAGCGGAAGA262GAGAAGTTGGCTTCAGTGCCTAGTGGCGGTGGCGCTGCTGCTGTTGCTGC
Aeschynomene indica mRNA 5-prime sequence from clone ADL0ABA1YL03 (ADL0ABA1YL03CM1).
FO998962.1:278-297
GATATCACCGAGCTAATTGCTAGCGGAAGA278GAGAAGTTGGCTTCAGTGCCTAGTGGCGGTGGTGCTGCTGCTGTTGCTGC
Solanum melongena mRNA, clone: AE001B21, 5'end, expressed in ovary at anthesis.
FS000064.1:230-249
GATATCACTGAGCTGATTGCTGCTGGCAGG230GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: AE003P06, 5'end, expressed in ovary at anthesis.
FS001749.1:229-248
GATATCACTGAGCTGATTGCTGCTGGCAGG229GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: AE004N09, 5'end, expressed in ovary at anthesis.
FS002298.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: AE005E19, 5'end, expressed in ovary at anthesis.
FS002579.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: AE005F22, 5'end, expressed in ovary at anthesis.
FS002621.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: AE007I02, 5'end, expressed in ovary at anthesis.
FS003762.1:228-247
GATATCACTGAGCTGATTGCTGCTGGCAGG228GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: AE504D05, 5'end, expressed in ovary at 5d post-anthesis.
FS005790.1:228-247
GATATCACTGAGCTGATTGCTGCTGGCAGG228GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: CAL03L18, 5'end, expressed in callus at 3d after subculture.
FS009528.1:230-249
GATATCACTGAGCTGATTGCTGCTGGCAGG230GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: CPA01C17, 5'end, expressed in ovary at 24h after anthesis.
FS014763.1:81-100
GATATCACTGAGCTGATTGCTGCTGGCAGG81GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: CPA01O15, 5'end, expressed in ovary at 24h after anthesis.
FS015273.1:223-242
GATATCACTGAGCTGATTGCTGCTGGCAGG223GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: CPA05K17, 5'end, expressed in ovary at 24h after anthesis.
FS017451.1:230-249
GATATCACTGAGCTGATTGCTGCTGGCAGG230GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: LS002E05, 5'end, expressed in ovary at anthesis.
FS018458.1:223-242
GATATCACTGAGCTGATTGCTGCTGGCAGG223GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: LS002K11, 5'end, expressed in ovary at anthesis.
FS018705.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: OVL01F11, 5'end, expressed in ovary at 2d pre-anthesis.
FS027337.1:229-248
GATATCACTGAGCTGATTGCTGCTGGCAGG229GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: OVS01J03, 5'end, expressed in ovary at 5d pre-anthesis.
FS029863.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: OVS05H06, 5'end, expressed in ovary at 5d pre-anthesis.
FS032314.1:218-237
GATATCACTGAGCTGATTGCTGCTGGCAGG218GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: PED01G08, 5'end, expressed in peduncle at anthesis.
FS033456.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: PER01G16, 5'end, expressed in pericarp at 10d after anthesis.
FS037855.1:222-241
GATATCACCGAGCTGATTGCTACTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: PLA01M22, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS043064.1:228-247
GATATCACTGAGCTGATTGCTGCTGGCAGG228GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTG
Solanum melongena mRNA, clone: PLA05D11, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045325.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: PLA05J16, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045572.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: PST02P18, 5'end, expressed in mixture of petal and stamen at anthesis.
FS049011.1:316-335
GATATCACTGAGCTGATTGCTGCTGGCAGG316GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: RBW01H07, 5'end, expressed in root at 3w after germination.
FS049837.1:228-247
GATATCACTGAGCTGATTGCTGCTGGCAGG228GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: RBW02J08, 5'end, expressed in root at 3w after germination.
FS050417.1:230-249
GATATCACTGAGCTGATTGCTGCTGGCAGG230GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: RBW04C14, 5'end, expressed in root at 3w after germination.
FS051137.1:228-247
GATATCACTGAGCTGATTGCTGCTGGCAGG228GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: ROL05B09, 5'end, expressed in root at 3w after germination.
FS054962.1:230-249
GATATCACTGAGCTGATTGCTGCTGGCAGG230GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: ROL05G13, 5'end, expressed in root at 3w after germination.
FS055113.1:230-249
GATATCACTGAGCTGATTGCTGCTGGCAGG230GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: SEP01B03, 5'end, expressed in sepal at 10d after anthesis.
FS058184.1:229-248
GATATCACTGAGCTGATTGCTGCTGGCAGG229GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: SEP01P15, 5'end, expressed in sepal at 10d after anthesis.
FS058786.1:228-247
GATATCACTGAGCTGATTGCTGCTGGCAGG228GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
Solanum melongena mRNA, clone: SEP02G08, 5'end, expressed in sepal at 10d after anthesis.
FS059056.1:222-241
GATATCACTGAGCTGATTGCTGCTGGCAGG222GAGAAGTTGGCTTCAGTGCCCGCTGGTGGTGGTGGTGGAGTTGCAGTTGC
TSA: Sedum alfredii, clone Sa_Contig03529.
HE720634.1:267-286
GACATTACTGAGCTTATTGCATCTGGAAGG267GAGAAGTTGGCTTCAGTGCCGTCAGGTGGTGGCAGTGGAGCGGTAGCTGT
TSA: Medicago truncatula Contig2593.Metrroot mRNA sequence.
JR371236.1:152-171
GATTTTGCCGAGCTAATTGCTAGTGGCAGA152GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
TSA: Eustoma exaltatum subsp. russellianum E_gra_c8645 mRNA sequence.
JT565353.1:258-277
GATATTACTGAGCTAATTGCAGCTGGTAGA258GAGAAGTTGGCTTCAGTGCCGTCTGGTGGTGGTGCCGGGGTTGCTGTTGC
TSA: Eustoma exaltatum subsp. russellianum E_gra_c41628 mRNA sequence.
JT598225.1:258-277
GATATTACTGAGCTAATTGCAGCTGGTAGA258GAGAAGTTGGCTTCAGTGCCGTCTGGTGGTGGTGCCGGGGTTGCTGTTGC
BS_LBa026M09.F BS_LBa Boechera stricta genomic 5', genomic survey sequence.
KS440727.1:388-407
GACTTGGCTGAGCTAATTGCTGCCGGAAGG388GAGAAGTTGGCTTCAGTGCCGTCAGGTGGTGGTGGTGTTGCGATGGCTTC
Rattus norvegicus clone CH230-8A19, WORKING DRAFT SEQUENCE.
AC125802.4:83270-83289
GCTTGATTTTTCCATGTCCTCTGATTTATA83270GAGAAGTTGGCTTCAGTGCCAAGTGTTTTACACCAAGCTTTAGATGGTGA
Medicago truncatula clone MTYFP_FQ_FR_FS1G-M-3 unknown mRNA.
BT053450.1:238-257
GATTTTGCCGAGCTAATTGCTAGTGGCAGA238GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
Medicago truncatula clone JCVI-FLMt-12F24 unknown mRNA.
BT138786.1:238-257
GATTTTGCCGAGCTAATTGCTAGTGGCAGA238GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
Medicago truncatula clone JCVI-FLMt-7L17 unknown mRNA.
BT145513.1:239-258
GATTTTGCCGAGCTAATTGCTAGGGGCAGA239GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
Linum usitatissimum clone LU0004E11 mRNA sequence.
EU829616.1:251-270
GACACCACTGAACTGATTGCAGCTGGTATG251GAGAAGTTGGCTTCAGTGCCATCGGGTGGTGGTGGTGTTGCAGTTGCCGC
Medicago lupulina genome assembly, chromosome: 8.
OY283146.1:37460281-37460300
GATTTTGCCGAGCTAATTGCTAGTGGCAGA37460281GAGAAGTTGGCTTCAGTGCCTTCTGGTGGAGGTGCTGTTGCTGTTGCTGC
Nezara viridula genome assembly, chromosome: 5.
OV725081.1:63788188-63788207
TTATATAATATTACCTTCCTTCCAGGTAAA63788188GAGAAGTTGGCTTCAGTGCCCTCAGGAGGTGGTGGTGCCCCTGCCGCTGC
Rhaphigaster nebulosa genome assembly, chromosome: 4.
OX411310.1:54637317-54637336
TTATTAAATATTACCTTCCTTTCAGGAAAA54637317GAGAAGTTGGCTTCAGTGCCTTCAGGAGGTGGTGGAGCACCTGCCGCTGC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GAGAAGTTGGCTTCAGTGCC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GAGAAGTTGGCTTCAGTGCC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
3.155 | 3.146 | search_plus_done; http://172.18.8.135:50400/match?q=GAGAAGTTGGCTTCAGTGCC&k=0&no_gap=0&offset=0&limit=50
3.215 | 0.060 | search_minus_done; http://172.18.8.135:50400/match?q=GGCACTGAAGCCAACTTCTC&k=0&no_gap=0&offset=0&limit=0
3.215 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).