GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-08 21:11:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 510 from Patent WO2010095150.
HH795498.1:202-223
GACTTGATCCTTCTCTTTCTAAGGCGCTCT202GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC
WS0194.B21_E21 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS0194_E21 3', mRNA sequence.
CV231358.1:278-299
GATCCAATCCTCCTCCTTCTAAGGCGCTCT278GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS01225.B21.1_C03 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01225_C03 3', mRNA sequence.
CV236709.1:287-308
GATCCAATCCTCCTCCTTCTAAGGCGCTCT287GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS02510.B21_N22 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_N22 3', mRNA sequence.
CV240972.1:284-305
GATCCAATCCTCCTCCTTCTAAGGCGCTCT284GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS0244.B21_L05 PTxD-ICC-N-A-14 Populus trichocarpa x Populus deltoides cDNA clone WS0244_L05 3', mRNA sequence.
CV256748.1:289-310
GATCCAATCCTCCTCCTTCTAAGGCGCTCT289GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS02026.B21_G12 PTxN-IB-N-A-11 Populus trichocarpa x Populus nigra cDNA clone WS02026_G12 3', mRNA sequence.
CV265127.1:301-322
GATCCAATCCTCCTCCTTCTAAGGCGCTCT301GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS0154.B21_L15 PTxN-IB-A-6 Populus trichocarpa x Populus nigra cDNA clone WS0154_L15 3', mRNA sequence.
CV271445.1:269-290
GATCCAAGCCTCCTCCTTCTAAGGCGCTCT269GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS0144.B21_C09 PTxD-IL-A-5 Populus trichocarpa x Populus deltoides cDNA clone WS0144_C09 3', mRNA sequence.
CV277639.1:281-302
GATCCAATCCTCCTCCTTCTAAGGCGCTCT281GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGC
Populus nigra mRNA, clone: PnFL2-101_J09, 3'end.
DB910342.1:293-314
GATCCAAGCCTCCTCCTTCTAAGGCGCTCT293GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS01920.C21_P05 PT-DX-N-A-10 Populus trichocarpa cDNA clone WS01920_P05 3', mRNA sequence.
DT470466.1:306-327
GATCCAATCCTCCTCCTTCTAAGGCGCTCT306GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
WS02530.B21_I23 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02530_I23 3', mRNA sequence.
DT486288.1:284-305
GATCCAATCCTCCTCCTTCTAAGGCGCTCT284GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCGTTGAGCCTGGGATCAC
Jatropha curcas EST, clone rjcfea0_001260.
FM887963.1:252-273
GACTTGATCCTTCTCTTTCTAAGGCGCTCT252GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC
JcrME_RL0687 Expressed sequence tags from Jatropha curcas root cDNA library Jatropha curcas cDNA, mRNA sequence.
GO247143.1:202-223
GACTTGATCCTTCTCTTTCTAAGGCGCTCT202GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC
JCST247 Jatropha curcas L. seed cDNA library Jatropha curcas cDNA 5', mRNA sequence.
JK317480.1:238-259
GACTTGATCCTTCTCTTTCTAAGGCGCTCT238GCAATGATGAATGCAAGCTCTAGAGATTGTGAAGCATTGAGTCTAGGGTCAC
Draba incana genome assembly, chromosome: 11.
OY755212.1:7439666-7439687
GAACCGAGCCTTCGCTTTCGTAGACGCTCT7439666GCAATGATGAATGCAAGCTCTAGAGACTGAGAAGCGTTGAGCCTTGGGTCAC
Populus euphratica EST, clone P0000400034G04F1.
AJ777762.1:243-264
GTGATCCCAGGCTCAACGCTTCACAATCTC243TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGGAGGAGGAGGATTGGATC
PtaJXO0014A4A0402 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba cDNA 5', mRNA sequence.
CF232649.1:75-96
GTGATCCCAGGCTCAACGCTTCACAATCTC75TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGGAGGAGGAGGATTGGATC
PtaJXO0014B1B0103 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba cDNA 5', mRNA sequence.
CF232656.1:255-276
GTGATCCCAGGCTCAACGCTTCACAATCTC255TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC
PtaJXO0027E8E0810 Poplar cDNA library from young opposite xylem Populus tremula x Populus alba cDNA 5', mRNA sequence.
CF233780.1:271-292
GTGATCCCAGGCTCAACGCTTCACAATCTC271TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC
B9P10d03 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK318539.1:89-110
GTGATCCCAGGCTCAACGCTTCACAATCTC89TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC
X9P01g05 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK318652.1:286-307
GTGATCCCAGGCTCAACGCTTCACAATCTC286TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC
X9P03g11 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK318829.1:267-288
GTGATCCCAGGCTCAACGCTTCACAATCTC267TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC
X9P09c09 Populus stem seasonal library Populus deltoides cDNA, mRNA sequence.
CK319308.1:536-557
GTGATCCCAGGCTCAACGCTTCACAATCTC536TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAAAGGA
CCPW14293.b1_I21.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPW14293, mRNA sequence.
GE590245.1:262-283
GCGACCCTAGACTGAACGCGAGCCAATCGC262TAGAGCTTGCATTCATCATTGCGGAGCGGCTCAGAAAGAGGAGAATGGGGGT
CCPW16251.b1_F07.ab1 CCP(UWX) Globe Artichoke Cynara cardunculus var. scolymus cDNA clone CCPW16251, mRNA sequence.
GE592352.1:245-266
GCGACCCTAGACTGAACGCGAGCCAATCGC245TAGAGCTTGCATTCATCATTGCGGAGCGGCTCAGAAAGAGGAGAATGGGGGT
HYS09898 Hybrid poplar cambium cDNA library during tension wood formation Populus simonii x Populus nigra cDNA clone 23_H09.ab1, mRNA sequence.
GH627404.1:282-303
GTGATCCCAGGCTCAACGCTTCACAATCTC282TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGCTTGGATC
JCST27 Jatropha curcas L. seed cDNA library Jatropha curcas cDNA 3' similar to Nicotiana tabacum 2-dehydro-3-deoxyphosphoheptonate aldolase,putative/3-deoxy-D-arabino-heptulosonate 7-phosphate synthas
GR209248.1:197-218
GTGACCCTAGACTCAATGCTTCACAATCTC197TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAAGAGAAGGATCAAGTC
EST0635 (SY-2011) cDNA Library of Larix gmelini under treated with Jasmonic acid Larix gmelinii cDNA, mRNA sequence.
HS982581.1:44-65
CATTACGGCCGGGCAACGCTTCACAATCTC44TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGTGGAGGCTTGGATC
TSA: Jatropha curcas Contig2848, mRNA sequence.
EZ410129.1:1479-1500
GTGACCCTAGACTCAATGCTTCACAATCTC1479TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAAGAGAAGGATCAAGTC
Populus trichocarpa clone WS01225_C03 unknown mRNA.
EF146934.1:1587-1608
GTGATCCCAGGCTCAACGCTTCACAATCTC1587TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGATTGGATC
Populus nigra genome assembly, chromosome: 5.
OX637676.1:8753725-8753746
GTGATCCCAGGCTCAACGCTTCACAATCTC8753725TAGAGCTTGCATTCATCATTGCAGAGCGCCTTAGAAGGAGGAGGCTTGGATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAATGATGAATGCAAGCTCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAATGATGAATGCAAGCTCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.668 | 0.660 | search_plus_done; http://172.18.8.135:50400/match?q=GCAATGATGAATGCAAGCTCTA&k=0&no_gap=0&offset=0&limit=50
1.276 | 0.608 | search_minus_done; http://172.18.8.135:50400/match?q=TAGAGCTTGCATTCATCATTGC&k=0&no_gap=0&offset=0&limit=35
1.287 | 0.011 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).