GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 04:23:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 15 from Patent WO2012088289.
JA817678.1:522-541
ATCGCTTGGGATCACAACAATTTCCTGTTA522GCACAACCCACTCTCCATCAATCAATCAGGGTCTTTACTACTCTTTTCAT
Sequence 15 from patent US 9702013.
KH919205.1:522-541
ATCGCTTGGGATCACAACAATTTCCTGTTA522GCACAACCCACTCTCCATCAATCAATCAGGGTCTTTACTACTCTTTTCAT
Sequence 15 from patent US 10590490.
MO959482.1:522-541
ATCGCTTGGGATCACAACAATTTCCTGTTA522GCACAACCCACTCTCCATCAATCAATCAGGGTCTTTACTACTCTTTTCAT
lkz42c03.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ059013.1:666-685
ATCGTTTGGAATCACAAAAATTGACCGTTA666GCACAACCCACTCTCCATCATTCAATCATGTTCTTTACTACTCTTTTCAT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:58370011-58370030
ATCGCTTGGGATCACAACAATTTCCTGTTA58370011GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT
Brassica napus genome assembly, chromosome: A09.
HG994363.1:42252841-42252860
ATCGCTTGGGATCACAACAATTTCCTGTTA42252841GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT
Brassica rapa genome, scaffold: A09.
LR031568.1:46586640-46586659
ATCGCTTGGGATCACAACAATTTCCTGTTA46586640GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:57053319-57053338
ATCGCTTGGGATCACAACAATTTCCTGTTA57053319GCACAACCCACTCTCCATCAATCAATCAGGTTCTTTACTACTCTTTTCAT
Synechococcus sp. SYN20 chromosome, complete genome.
CP047959.1:511997-512016
AAAATTCCAATCCGTAGGCTACGGCGTAGC511997GCACAACCCACTCTCCATCATCCGCAGCACGATTTAAGGCCTGAATGCAA
Melangyna quadrimaculata genome assembly, chromosome: 3.
OX439485.1:157104097-157104116
TTTAGACGAGAACCTCATAATTATGATAAA157104097GCACAACCCACTCTCCATCAAACTGAGATCTATCAGCAAATGCTTGCCGA
Erinaceus europaeus genome assembly, chromosome: 12.
OX485822.1:30522683-30522702
TTCAGAAATTTGTAATATCAGTTTGATGTT30522683TGATGGAGAGTGGGTTGTGCTATAGTTACATGTAAAGAGGTTCTATTTTC
Gymnoscopelus microlampas genome assembly, chromosome: 20.
OY732722.1:5311649-5311668
TAAAACATGGGAGTACTTTTTTTCCATCGC5311649TGATGGAGAGTGGGTTGTGCGTGTAAAATACTGAACTTCCGATTGGACGC
Sequence 155 from Patent WO2012088289.
JA817818.1:2-21
T2TGATGGAGAGTGGGTTGTGCT
Sequence 155 from patent US 9702013.
KH919345.1:2-21
T2TGATGGAGAGTGGGTTGTGCT
Sequence 155 from patent US 10590490.
MO959622.1:2-21
T2TGATGGAGAGTGGGTTGTGCT
odd95b05.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH965245.1:340-359
ATGAAAAGAGTAGTAAAGAACATGATTGAA340TGATGGAGAGTGGGTTGTGCTAACGGTCAATTTTTGTGATTCCAAACGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB023B16, complete sequence.
AC189269.2:85851-85870
ATGAAAAGAGTAGTAAAGAACCTGATTGAT85851TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB087M20, complete sequence.
AC189502.2:13122-13141
ATGAAAAGAGTAGTAAAGAACCTGATTGAT13122TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica napus microsatellite Y49F131-1 sequence.
JX131190.1:221-240
ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica napus microsatellite Y49F131-9 sequence.
JX131191.1:221-240
ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica napus microsatellite Y49F132-1 sequence.
JX131192.1:221-240
ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica napus microsatellite Y49F132-2 sequence.
JX131193.1:221-240
ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica napus microsatellite Y49F133-9 sequence.
JX131195.1:221-240
ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica napus microsatellite Y49F135-5 sequence.
JX131197.1:221-240
ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTCGTGATCCCAAGCGAT
Brassica napus microsatellite Y49F136-9 sequence.
JX131199.1:221-240
ATGAAAAGAGTAGTAAAGAACCTGATTGAT221TGATGGAGAGTGGGTTGTGCTAACAGGAAATTGTTGTGATCCCAAGCGAT
Brassica oleracea HDEM genome, scaffold: C7.
LR031876.1:51820039-51820058
ATGAAAAGAGTAGTAAAGAACATGATTGAA51820039TGATGGAGAGTGGGTTGTGCTAACGGTCAATTTTTGTGATTCCAAACGAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCACAACCCACTCTCCATCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCACAACCCACTCTCCATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.297 | 0.288 | search_plus_done; http://172.18.8.135:50400/match?q=GCACAACCCACTCTCCATCA&k=0&no_gap=0&offset=0&limit=50
0.573 | 0.276 | search_minus_done; http://172.18.8.135:50400/match?q=TGATGGAGAGTGGGTTGTGC&k=0&no_gap=0&offset=0&limit=40
0.584 | 0.010 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).