GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 05:45:42, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOHIS18TF BOHI Brassica oleracea genomic clone BOHIS18, genomic survey sequence.
BH493474.1:530-549
GATTTAGTGAACATTTTGTTTGATAATTCA530GCGTCAGTCTGAACAAAACGATCAAAAGTACTAGCACTAAATAACATATA
BOHIS18TR BOHI Brassica oleracea genomic clone BOHIS18, genomic survey sequence.
BH493481.1:482-501
TATATGTTATTTAGTGCTAGTACTTTTGAT482CGTTTTGTTCAGACTGACGCTGAATTATCAAACAAAATGTTCACTAAATC
BONGA21TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONGA21, genomic survey sequence.
BZ460208.1:267-286
TATATGTTATTTAGTGCTAGTACTTTTGAT267CGTTTTGTTCAGACTGACGCTGAATTATCAAACAAAATGTTCACTAAATC
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.
AC189388.2:57783-57802
ATAATGTTATTTAGTACTAGTATTTTTGAT57783CGTTTTGTTCAGACTGACGCTGAATTATCAAATAAAATGTTCACTAAATC
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:738789-738808
ATAATGTTATTTAGTACTAGTATTTTTGAT738789CGTTTTGTTCAGACTGACGCTGAATTATCAAATAAAATGTTCACTAAATC
Brassica napus genome assembly, chromosome: A02.
HG994356.1:631251-631270
ATAATGTTATTTAGTACTAGTATTTTTGAT631251CGTTTTGTTCAGACTGACGCTGAATTATCAAATAAAATGTTCACTAAATC
Brassica rapa genome, scaffold: A02.
LR031573.1:672044-672063
ATAATGTTATTTAGTACTAGTATTTTTGAT672044CGTTTTGTTCAGACTGACGCTGAATTATCAAATAAAATGTTCACTAAATC
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:1271748-1271767
TATATGTTATTTAGTGCTAGTACTTTTGAT1271748CGTTTTGTTCAGACTGACGCTGAATTATCAAACAAAATGTTCACTAAATC
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:682044-682063
ATAATGTTATTTAGTACTAGTATTTTTGAT682044CGTTTTGTTCAGACTGACGCTGAATTATCAAATAAAATGTTCACTAAATC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCGTCAGTCTGAACAAAACG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCGTCAGTCTGAACAAAACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.109 | 0.100 | search_plus_done; http://172.18.8.135:50400/match?q=GCGTCAGTCTGAACAAAACG&k=0&no_gap=0&offset=0&limit=50
0.157 | 0.048 | search_minus_done; http://172.18.8.135:50400/match?q=CGTTTTGTTCAGACTGACGC&k=0&no_gap=0&offset=0&limit=49
0.163 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).