GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-19 02:12:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 45252 from patent US 8952217.
HK443066.1:1002-1021
GAGACCGGGAATCAAGTCTACCATTGAGAA1002GGGAGTTAAGTTTGCCAACCAATGA
Sequence 46028 from patent US 8952217.
HK443449.1:1002-1021
GAGACCGGGAATCAAGTCTACCATTGAGAA1002GGGAGTTAAGTTTGCCAACCAATGA
Sequence 70181 from patent US 8952217.
HK455371.1:1046-1065
GAAACCGGAACTCAAGTCTTCCATTGAGAA1046GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
Sequence 70301 from patent US 8952217.
HK455431.1:1046-1065
GAAACCGGAACTCAAGTCTTCCATTGAGAA1046GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a013O17_T7.
AM390773.1:491-510
GAAGCCAGAACTAAAGTCTTCNNNCGAGAA491GGGAGTTAAGTTTGCCAACCAATGAGTAAACCC
BN15.027M11F020325 BN15 Brassica napus cDNA clone BN15027M11, mRNA sequence.
CD815873.1:355-374
GAAACCGGCACTCAAGTCTTCCATTGAGAA355GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
80-E023578-021-022-P19-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022P1922Q, mRNA sequence.
CX188922.1:434-453
GAAGCCAGAACTAAAGTCTTCCATCGAGAA434GGGAGTTAAGTTTGCCAACCAATGAGTAAACCAGTTGTTTTTTTCAAAAT
56-E024498-021-024-O13-frev ADIS-MPIZ 021 Brassica napus cDNA clone MPIZp1022O1324Q, mRNA sequence.
CX191173.1:43-62
GAAGCCAGAACTAAAGTCTTCCATCGAGAA43GGGAGTTAAGTTTGCCAACCAATGAGTAAACCAGTTGTTTTTTTCAAAAT
Brassica oleracea var. viridis mRNA, clone: KALE-102F21, 3' end sequence.
DK554280.1:632-651
GAAGCCAGAACTAAAGTCTTCCATCGAGAA632GGGAGTTAAGTTTGCCAACCAATGAGTAAACCAGTTGTTTTTTTCAAAAT
Brassica oleracea var. viridis mRNA, clone: KALE-152L20, 3' end sequence.
DK573523.1:518-537
GAAGCCAGAACTCAAGTCTTCTATCGAGAA518GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTTGACTCGGTTTATT
HC2466 GIBCOBRL CAT. NO. 19643-014 Brassica rapa subsp. pekinensis cDNA, mRNA sequence.
DN192199.1:43-62
GAAGCCGGAACTCAAGTCTTCCATTGAGAA43GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNDH4DCT_UP_022_A05_22DEC2004_047 Brassica napus seeds BNDH4DCT Brassica napus cDNA 5', mRNA sequence.
DY006665.1:120-139
GAAGCCGGAACTCAAGTCTTCCATTGAGAA120GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
53COT5_T3_005_B08_29JUN2004_062 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY020410.1:378-397
GAAGCCGGAACTCAAGTCTTCCATTGAGAA378GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
53COT5_T3_005_E12_29JUN2004_088 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY020438.1:527-546
GAAGCCGGAACTCAAGTCTTCCATTGAGAA527GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
63JKCOT5_T3_027_C12_24JAN2005_092 63JKCOT5 Brassica napus cDNA 5', mRNA sequence.
DY022208.1:140-159
GAAGCCGGAACTCAAGTCTTCCATTGAGAA140GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
34ETGS48_UP_022_E12_09FEB2005_088 Brassica napus 34ETGS48 Brassica napus cDNA 5', mRNA sequence.
EE431003.1:516-535
GAAGCCAGAACTCAAGTCTTCTATCGAGAA516GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTTGACTCGGTTTATT
BNBS6DCT_UP_006_H08_12APR2005_050 Brassica napus seeds BNBS6DCT Brassica napus cDNA 5', mRNA sequence.
EE456430.1:556-575
GAAACCGGAACTCAAGTCTTCCATTGAGTA556GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNSCS3CT_UP_015_B08_10JAN2005_062 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466123.1:574-593
GAAGCCGGAACTCAAGTCTTCCATTGAGAA574GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNSCS3CT_UP_015_F11_10JAN2005_085 Brassica napus seed coat BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EE466167.1:639-658
GAAGCCGGAACTCAAGTCTTCCATTGAGAA639GGGAGTTAAGTTTGCCAACCAATGAGTTAACCGGGTTTGACTCGGTTATG
BNSCS4CT_UP_018_B10_18JAN2005_078 Brassica napus seed coat BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EE469048.1:421-440
GAAGCCGGAACTCAAGTCTTCCATTGAGAA421GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNSCS5CT_UP_029_C06_26JAN2005_044 Brassica napus seed coat BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EE472801.1:546-565
GAAGCCAGAACTCAAGTCTTCTATCGAGAA546GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTTGACTCGGTTTATT
BNYS6DCT_UP_026_A01_06MAY2005_015 Brassica napus seeds BNYS6DCT Brassica napus cDNA 5', mRNA sequence.
EE480056.1:177-196
GAAGCCGGAACTCAAGTCTTCCATTGAGAA177GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
24RDBNH_UP_053_B05_29FEB2004_045 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
EE508203.1:332-351
GAAGCCGGAACTCAAGTCTTCCATTGAGAA332GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
46RDOAG_UP_040_A04_27DEC2004_032 O. Alba 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
EE533072.1:528-547
GAAGCCAGAACTAAAGTCTTCCATCGAGAA528GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGGTTGTTTTTTTAAAAAT
49RDOAT_UP_019_C12_04OCT2004_092 O. Alba 49RDOAT Brassica oleracea cDNA 5', mRNA sequence.
EE535126.1:405-424
GAAGCCAGAACTAAAGTCTTCCATCGAGAA405GGGAGTTAAGTTTGCCAACCAATGAGTAAACCAGTTGTTTTTTTAAAAAT
BNZB_UP_161_B07_29SEP2005_061 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
EE568306.1:112-131
GAAGCCAGAACTCAAGTCTTCTATCGAGAA112GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
EST6141 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B284F031, mRNA sequence.
EL628633.1:90-109
GAAGCCAGAACTCAAGTCTTCTATCGAGAA90GGGAGTTAAGTTTGCCAACCAATGATTAAACCGATTCGACTCGGTTTATT
JKBNM4_T7_003_B06_10FEB2004_046 JKBNM4 Brassica napus cDNA 3', mRNA sequence.
ES269738.1:282-301
GAAACCGGAACTCAAGTCTTCCATTGAGAA282GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNARO2GH_T3_009_G02_15DEC2006_004 Brassica napus BNARO2GH Brassica napus cDNA 5', mRNA sequence.
ES911394.1:529-548
GAAGCCGGAACTCAAGTCTTCCATTGAGAA529GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
24RDBNH_UP_172_F09_14DEC2006_069 Brassica napus 24RDBNH Brassica napus cDNA 5', mRNA sequence.
ES921949.1:297-316
GAAGCCGGAACTCAAGTCTTCCATTGAGAA297GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
46RDOAG_UP_067_C04_01FEB2006_028 Brassica oleracea 46RDOAG Brassica oleracea cDNA 5', mRNA sequence.
ES938752.1:625-644
GAAGCCAGAACTAAAGTCTTCCATCGAGAA625GGGAGTTAAGTTTGCCAACCAATGAGTAAACCAGTTGTTTTTTTAAAAAT
9RDBNGA_UP_155_C06_10MAR2006_044 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES956681.1:4-23
GAA4GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
9RDBNGA_UP_209_F10_22SEP2006_070 Brassica napus 9RDBNGA Brassica napus cDNA 5', mRNA sequence.
ES960910.1:160-179
GAAGCCGGAACTCAAGTCTTCCATTGAGAA160GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
BNQA_UP_118_F11_09NOV2005_085 Brassica napus BNQA Brassica napus cDNA 5', mRNA sequence.
ES965439.1:32-51
GAAGCCGGAACTCAAGTCTTCCCTTGAGAA32GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNAEN3GH_UP_076_B04_14SEPT2006_030 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
ES998042.1:255-274
GAAGCCGGAACTCAAGTCTTCCATTGAGAA255GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
BNAEN3GH_UP_192_H12_26NOV2006_082 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV005736.1:397-416
GAAGCCGGAACTCAAGTCTTCCATTGAGAA397GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNAEN3GH_UP_219_F05_28NOV2006_037 Brassica napus BNAEN3GH Brassica napus cDNA 5', mRNA sequence.
EV008073.1:91-110
GAAGCCAGAACTCAAGTCTTCTATCGAGAA91GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
BNBS2DCT_UP_024_C05_12MAR2005_043 Brassica napus BNBS2DCT Brassica napus cDNA 5', mRNA sequence.
EV010048.1:55-74
GAAACCGGAACTCAAGTCTTCCATTGAGAA55GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BNSCS2CT_UP_103_B08_20APR2007_062 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV023277.1:583-602
GAAGCCGGAACTCAAGTCTTCCATTGAGAA583GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
BNSCS2CT_UP_210_E12_27APR2007_088 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV031152.1:504-523
GAAGCCGGAACTCAAGTCTTCCATTGAGAA504GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
BNSCS2CT_UP_262_D07_03MAY2007_057 Brassica napus BNSCS2CT Brassica napus cDNA 5', mRNA sequence.
EV034836.1:517-536
GAAGCCGGAACTCAAGTCTTCCATTGAGAA517GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
BNSCS3CT_UP_239_E10_17MAY2007_072 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV055892.1:474-493
GAAGCCAGAACTCAAGTCTTCTATCGAGAA474GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
BNSCS5CT_UP_176_C07_01JUN2007_059 Brassica napus BNSCS5CT Brassica napus cDNA 5', mRNA sequence.
EV090610.1:384-403
GAAGCCGGAACTCAAGTCTTCCATTGAGAA384GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
0114671 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV109359.1:574-593
GAAGCCAGAACTCAAGTCTTCTATCGAGAA574GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
0131427 Brassica napus Root library Brassica napus cDNA, mRNA sequence.
EV126115.1:319-338
GAAACCGGAACTCAAGTCTTCCATTGAGAA319GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
0156534 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV173446.1:445-464
GAAGCCGGAACTCAAGTCTTCCATTGAGAA445GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BR000708 anther cDNA library KBAY Brassica rapa subsp. pekinensis cDNA clone KBAY-12H05 5', mRNA sequence.
EX016064.1:262-281
GAAACCGGAACTCAAGTCTTCCATTGAGAA262GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BR012183 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-048E06 5', mRNA sequence.
EX027539.1:556-575
GAAGCCAGAACTCAAGTCTTCTATCGAGAA556GGGAGTTAAGTTTGCCAACCAATGATTAAACCGATTCGACTCGGTTTATT
BR032032 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-017C01 5', mRNA sequence.
EX047388.1:377-396
GAAACCGGAACTCAAGTCTTCCATTGAGAA377GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BR033697 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-041G06 5', mRNA sequence.
EX049053.1:373-392
GAAACCGGAACTCAAGTCTTCCATTGAGAA373GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
BR034873 floral buds cDNA library KBFS Brassica rapa subsp. pekinensis cDNA clone KBFS-057A08 5', mRNA sequence.
EX050229.1:375-394
GAAACCGGAACTCAAGTCTTCCATTGAGAA375GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
b06_12na_1a.s 12na Brassica napus cDNA clone b06_12na_1a 5, mRNA sequence.
GT081007.1:44-63
GAAGCCAGAACTCAAGTCTTCTATCGAGAA44GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTTGACTCGGTTTATT
0246204 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO956211.1:437-456
GAAGCCAGAACTCAAGTCTTCTATCGAGAA437GGGAGTTAAGTTTGCCAACCAATGATTAAACCGATTCGACTCGGTTTATT
TSA: Raphanus sativus var. sativus RNA, contig: WG3_3180.
FX662070.1:1146-1165
GAAGCCTGAACTCAAGTCTTCCATCGAGAA1146GGGAGTTAAGTTTGCCAACCAATGATCAAACCGGGTTGACTCGGTTGTTG
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_7295.
FX707751.1:660-679
GAAACCGGAACTCAAGTCTTCCATTGAGAA660GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_40106.
FX746901.1:681-700
GAAGCCAGAACTCAAGTCTTCTATCGAGAA681GGGAGTTAAGTTTGCCAACCAATGATTAAACCGATTCGACTCGGTTTATT
fbnb003e001b11f1 Brassica napus methylation filtered library (LibID: 147) Brassica napus genomic, genomic survey sequence.
CZ887105.1:194-213
GAAGCCAGAACTAAAGTCTTCCATCGAGAA194GGGAGTTAAGTTTGCCAACCAATGAGTAAACCAGTTGTTTTTTTCAAAAT
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:10195852-10195871
GAAGCCAGAACTCAAGTCTTCTATCGAGAA10195852GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
Zea mays clone 10058 mRNA sequence.
DQ244689.1:1055-1074
GAAGCCGGAACTCAAGTCTTCCATTGAGAA1055GGGAGTTAAGTTTGCCAACCAATGAATCAAACCGGTTGTTTTTCCAGATT
Brassica napus genome assembly, chromosome: A05.
HG994359.1:10241075-10241094
GAAGCCAGAACTCAAGTCTTCTATCGAGAA10241075GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
Brassica napus genome assembly, chromosome: A08.
HG994362.1:1123737-1123756
GAAGCCGGAACTCAAGTCTTCCATTGAGAA1123737GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG
Brassica rapa genome, scaffold: A05.
LR031570.1:15933335-15933354
GAAGCCAGAACTCAAGTCTTCTATCGAGAA15933335GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
Brassica rapa genome, scaffold: A08.
LR031575.1:1178035-1178054
GAAGCCGGAACTCAAGTCTTCCATTGAGAA1178035GGGAGTTAAGTTTGCCAACCAATAAATCAAAACCGGTTGTTTTTCCAAAT
Raphanus sativus genome assembly, chromosome: 9.
LR778318.1:1272661-1272680
GAAGCCTGAACTCAAGTCTTCCATCGAGAA1272661GGGAGTTAAGTTTGCCAACCAATGATCAAACCGGGTTGACTCGGTTGTTG
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:10042791-10042810
GAAGCCAGAACTCAAGTCTTCTATCGAGAA10042791GGGAGTTAAGTTTGCCAACCAATGAGTAAACCGATTCGACTCGGTTTATT
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:1196257-1196276
GAAGCCGGAACTCAAGTCTTCCATTGAGAA1196257GGGAGTTAAGTTTGCCAACCAATAAATCAAAACCGGTTGTTTTTCCAAAT
Acer campestre genome assembly, chromosome: 11.
OX940809.1:10382544-10382563
CAAACCAGAGCTGAAGTCATCTATAGAGAA10382544GGGAGTTAAGTTTGCCAACCAAAGTTAAGAGGGGACAAGTTACTAAACTT
Barbarea vulgaris genome assembly, chromosome: 3.
OY763889.1:1204841-1204860
GAAGCCAGAACTCAAATCCTCCATCGAGAA1204841GGGAGTTAAGTTTGCCAACCAATAATTTAAACCGAGTTGAGTCGGGTTAT
B.napus mRNA for mitochondrial malate dehydrogenase.
X89451.1:1040-1059
GAGACCGGGAATCAAGTCTACCATTGAGAA1040GGGAGTTAAGTTTGCCAACCAATGAGTTAAACCGGTTTGACTCGGTTATG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGGAGTTAAGTTTGCCAACC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGGAGTTAAGTTTGCCAACC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
2.684 | 2.675 | search_plus_done; http://172.18.8.135:50400/match?q=GGGAGTTAAGTTTGCCAACC&k=0&no_gap=0&offset=0&limit=50
2.747 | 0.063 | search_minus_done; http://172.18.8.135:50400/match?q=GGTTGGCAAACTTAACTCCC&k=0&no_gap=0&offset=0&limit=0
2.747 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).