GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 05:57:24, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_582.
FX727689.1:2150-2170
GTTTAAGAGTGAGTGTGAGAGAGAGAGAAA2150GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:8311883-8311903
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA8311883GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:39740759-39740779
GAGAGAGACAGGGAGGGGAGATCTAAGAGA39740759GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica rapa genome, scaffold: A10.
LR031577.1:5278753-5278773
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA5278753GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:38903498-38903518
GAGAGAGACAGGGAGGGGAGATCTAAGAGA38903498GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:8027208-8027228
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA8027208GGTGAAGATCGCAAGTGTAGGATTGCCACATGTACTTGCTTCACTTATCTA
KBrB004G10F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB004G10, genomic survey sequence.
DX013252.1:85-105
TAGATAAGTGAAGCAAGTACATGTGGCAAT85CCTACACTTGCGATCTTCACCTTTCTCTCTCTCTCACACTCACTCTTAAAC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:12449758-12449778
TAGATAAGTGAAGCAAGTACATGTGGCAAT12449758CCTACACTTGCGATCTTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:25462988-25463008
TAGATAAGTGAAGCAAGTACATGTGGCAAT25462988CCTACACTTGCGATCTTCACCTCTCTTAGATCTCCCCTCCCTGTCTCTCTC
Brassica rapa subsp. chinensis clone D2 microsatellite sequence.
DQ407199.1:1-21
1CCTACACTTGCGATCTTCACCTTTCTCTCTCTCTCACACTCACTCTTAAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GGTGAAGATCGCAAGTGTAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GGTGAAGATCGCAAGTGTAGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.128 | 0.119 | search_plus_done; http://172.18.8.135:50400/match?q=GGTGAAGATCGCAAGTGTAGG&k=0&no_gap=0&offset=0&limit=50
0.181 | 0.053 | search_minus_done; http://172.18.8.135:50400/match?q=CCTACACTTGCGATCTTCACC&k=0&no_gap=0&offset=0&limit=44
0.184 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).