GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-20 07:28:33, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Sequence 192 from Patent EP1953235.
GM694636.1:1189-1213
ACACAAAGTGTGAAGGATGGGGGAAAAGCT1189GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Sequence 5346 from Patent WO2008142034.
GM958392.1:1189-1213
ACACAAAGTGTGAAGGATGGGGGAAAAGCT1189GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Sequence 5362 from Patent WO2008142034.
GM958408.1:1024-1048
ACACAAAGTGTGAAGGATGGGGGAAAAGCT1024GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Sequence 108366 from patent US 8541208.
HJ478303.1:1189-1213
ACACAAAGTGTGAAGGATGGGGGAAAAGCT1189GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Sequence 1181 from patent US 10750711.
MV606292.1:1021-1045
ACACAAAGTGTGAAGGATGGGGGGAAAGCT1021GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Sequence 1181 from patent US 11819027.
OT844328.1:1021-1045
ACACAAAGTGTGAAGGATGGGGGGAAAGCT1021GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
sa33e02.y1 Gm-c1004 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1004-1107 5' similar to SW:DHSO_BACSU Q06004 SORBITOL DEHYDROGENASE, mRNA sequence.
AI443419.1:189-213
ACACAAAGTGTGAAGGATGGGGGAAAAGCT189GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Medicago truncatula EST MtBC26D04F1 : T3 end of clone MtBC26D04 of cDNA library MtBC from arbuscular mycorrhiza of cultivar Jemalong of Medicago truncatula (barrel medic).
AL385102.1:408-432
ACACAAAGTGTGAAAGATGGAGGAAAAGCA408GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATAGAC
N100363e rootphos(-) Medicago truncatula cDNA clone MHRP-5A5, mRNA sequence.
AW126256.2:65-89
ACACAAAGTGTGAAAGATGGAGGAAAAGCA65GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATAGAC
sac79f06.y1 Gm-c1072 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1072-1787 5' similar to TR:Q9RIY6 Q9RIY6 PUTATIVE ZINC-CONTAINING DEHYDROGENASE, mRNA sequence.
BG510886.1:302-326
ACACAAAGTGTGAAGGATGGGGGGAAAGCT302GTGATGATTGGACTGGCACAAGCTGGTTCTTTA
EST507901 HOGA Medicago truncatula cDNA clone pHOGA-7A21 5' end, mRNA sequence.
BG646282.1:523-547
ACACAAAGTGTGAAAGATGGAGGAAAAGCA523GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATAGAC
META043TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
EY473980.1:403-427
ACACAAAGTGTGAAAGATGGAGGAAAAGCA403GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATAGAC
CCCC8277.b1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC8277 5', mRNA sequence.
GR836092.1:282-306
ACACAAAGTGTGAAGGATGGGGGAAAAGCT282GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
CCCC13529.b1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC13529 5', mRNA sequence.
GR843994.1:269-293
ACACAAAGTGTGAAGGATGGGGGAAAAGCT269GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
CCCC14638.b1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC14638 5', mRNA sequence.
GR845806.1:11-35
GGGAAAAGCT11GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Arachis hypogaea EST, cultivar Minhua6, clone GFBZZHF01BT30D.
LN661987.1:234-258
ACACAGAGCGTGAAGGACGGAGGAAAAGCC234GTGATGATTGGACTGGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGC
TSA: Arachis duranensis DurSNP_c11816.Ardu mRNA sequence.
HP011804.1:102-126
ACACAGAGCGTGAAGGACGGAGGAAAAGCC102GTGATGATTGGACTGGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGC
TSA: Arachis hypogaea Ahy.Unigene15973 mRNA sequence.
JR556166.1:972-996
ACACAGAGCGTGAAGGACGGAGGAAAAGCC972GTGATGATTGGACTGGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGC
BADH, Lupinus angustifolius 83A:476 Lupinus angustifolius 83A:476 genomic intron sequences Lupinus angustifolius genomic, genomic survey sequence.
DU723425.1:2-26
T2GTGATGATTGGACTGGCACAAGCTGGTTCAATGGGAGAGATAGATATAAATCGGC
BADH, Lupinus angustifolius P27255 Lupinus angustifolius P27255 genomic intron sequences Lupinus angustifolius genomic, genomic survey sequence.
DU723477.1:2-26
T2GTGATGATTGGACTGGCACAAGCTGGTTCAATGGGAGAGATAGATATAAATCGGC
Glycine max cDNA, clone: GMFL01-45-H03.
AK245899.1:1114-1138
ACACAAAGTGTGAAGGATGGGGGGAAAGCT1114GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
Glycine max cDNA, clone: GMFL01-52-P03.
AK246134.1:1129-1153
ACACAAAGTGTGAAGGATGGGGGAAAAGCT1129GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATCGGC
BADH-6 PCR fragment of the molecular marker, BADH-Ps-JI399 Pisum sativum STS genomic, sequence tagged site.
BV164942.1:2-26
T2GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGATCGATATAAATAGAC
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-03.
CP023115.1:25378483-25378507
ACACATAGTGTAAAGGATGGAGGAAAGGCC25378483GTGATGATTGGACTGGCACAAGCTGGTTCAATGGGAGAGATAGATATAAATCGGC
Arachis hypogaea cultivar Shitouqi chromosome A03.
CP030985.1:118530965-118530989
ACACAGAGCGTGAAGGACGGAGGAAAAGCC118530965GTGATGATTGGACTGGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGC
Arachis hypogaea cultivar Shitouqi chromosome B03.
CP030995.1:119593740-119593764
ACACAGAGCGTGAAGGACGGAGGAAAAGCC119593740GTGATGATTGGACTGGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGC
Arachis ipaensis cultivar K30076 chromosome 03.
CP049894.1:117387669-117387693
ACACAGAGCGTGAAGGACGGAGGAAAAGCC117387669GTGATGATTGGACTGGCACAAGCTGGTTCTGTGGGTGAGATGGATATAAACCGGC
Medicago lupulina genome assembly, chromosome: 4.
OY283142.1:5222593-5222617
ACACAAAGTGTGAAAGATGGAGGAAAAGCA5222593GTGATGATTGGACTGGCACAAGCTGGTTCTTTAGGAGAGGTGGATATAAATAGAC
Inga leiocalycina genome assembly, chromosome: 8.
OY725327.1:57868894-57868918
ACACAAAGTGTGAAGGATGGAGGAAAAGCT57868894GTGATGATTGGACTGGCACAAGCTGGTGCTGTAGGACAAATGGATATAAATCGCC
Glycine max cDNA clone: GMFL01-52-P03, 3'end, similar to alcohol dehydrogenase-like protein.
BW684879.1:488-512
GCCGATTTATATCCACCTCTCCTAAAGAAC488CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
MTGland_A007_2007-04-03/MTGlandA007_E06_020_1 Medicago truncatula A17 glandular trichome Medicago truncatula cDNA, mRNA sequence.
ES611433.1:415-439
GTCTATTTATATCCACCTCTCCTAAAGAAC415CAGCTTGTGCCAGTCCAATCATCACTGCTTTTCCTCCATCTTTCACACTTTGTGT
GLRAA96TR JCVI-SOY3 Glycine max cDNA 5', mRNA sequence.
FK023126.1:604-628
GCCGATTTATATCCACCTCTCCTAAAGAAC604CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
454GmaGlobSeed86148 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK351516.1:76-100
GCCGATTTATATCCACCTCTCCTAAAGAAC76CAGCTTGTGCCAGTCCAATCATCACAGCTTTCCCC
454GmaGlobSeed226551 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA sequence.
FK491919.1:158-182
GCCGATTTATATCCACCTCTCCTAAAGAAC158CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
CCCC6383.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC6383 3', mRNA sequence.
GR833403.1:586-610
GCCGATTTATATCCACCTCTCCTAAAGAAC586CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
CCCC8277.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC8277 3', mRNA sequence.
GR836093.1:388-412
GCCGATTTATATCCACCTCTCCTAAAGAAC388CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
CCCC10788.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC10788 3', mRNA sequence.
GR839688.1:393-417
GCCGATTTATATCCACCTCTCCTAAAGAAC393CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
CCCC13529.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC13529 3', mRNA sequence.
GR843995.1:586-610
GCCGATTTATATCCACCTCTCCTAAAGAAC586CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
CCCC14638.g1 CCCC Glycine max callus grown in dark condition Glycine max cDNA clone CCCC14638 3', mRNA sequence.
GR845807.1:561-585
GCCGATTTATATCCACCTCTCCTAAAGAAC561CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCC
TSA: Arachis hypogaea CL113Contig2.Arhy mRNA sequence.
EZ751441.1:355-379
GCCGGTTTATATCCATCTCACCCACAGAAC355CAGCTTGTGCCAGTCCAATCATCACGGCTTTTCCTCCGTCCTTCACGCTCTGTGT
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_4512 mRNA sequence.
JL885708.1:418-442
GTCTATTTATATCCACCTCTCCTAAAGAAC418CAGCTTGTGCCAGTCCAATCATCACTGCTTTTCCTCCATCTTTCACACTTTGCGT
Medicago truncatula clone mth2-50l17, complete sequence.
AC148758.19:80875-80899
GTCTATTTATATCCACCTCTCCTAAAGAAC80875CAGCTTGTGCCAGTCCAATCATCACTGCTTTTCCTCCATCTTTCACACTTTGTGT
Lotus japonicus B-129 DNA, chromosome 4, complete sequence.
AP022632.1:79109562-79109586
GCCGATTTATATCCACCTCTCCAAGGGTAC79109562CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCTCCATCTTTCACACTCTGTAC
Glycine max cultivar Williams 82 chromosome 5.
CP126430.1:40418600-40418624
GCCGATTTATATCCACCTCTCCTAAAGAAC40418600CAGCTTGTGCCAGTCCAATCATCACAGCTTTCCCCCCATCCTTCACACTTTGTGT
Glycine max cultivar Williams 82 chromosome 8.
CP126433.1:391906-391930
GCCGATTTATATCCACCTCTCCTAAAGAAC391906CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCCCCATCCTTCACACTTTGTGT
Inga oerstediana genome assembly, chromosome: 9.
OY723407.1:9019587-9019611
GGCGATTTATATCTATTTGTCCTACAGCAC9019587CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCTCCATCCTTCACACTTTGTGT
Inga laurina genome assembly, chromosome: 9.
OY979709.1:9226928-9226952
GGCGATTTATATCCATTTGTCCTACAGCAC9226928CAGCTTGTGCCAGTCCAATCATCACAGCTTTTCCTCCATCCTTCACACTTTGTGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTGATGATTGGACTGGCACAAGCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTGATGATTGGACTGGCACAAGCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.890 | 0.881 | search_plus_done; http://172.18.8.135:50400/match?q=GTGATGATTGGACTGGCACAAGCTG&k=0&no_gap=0&offset=0&limit=50
1.727 | 0.836 | search_minus_done; http://172.18.8.135:50400/match?q=CAGCTTGTGCCAGTCCAATCATCAC&k=0&no_gap=0&offset=0&limit=21
1.739 | 0.012 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).