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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 07:28:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_17575.
FX709827.1:322-341
CTTTGTCCATGCATTCTTTCATCTTCAGCA322GTTCGTTCAGGCACCATTTTGACTCGGTGTACCTCACAGAAAAGAGAGCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_70400.
FX775935.1:209-228
CTTTGTCCATGCATTCTTTCATCTTCAGCA209GTTCGTTCAGGCACCATTTTGACTCGGTGTACCTCACAGAAAAGAGAGCC
BOHKR18TR BOHK Brassica oleracea genomic clone BOHKR18, genomic survey sequence.
BH539980.1:602-621
CTTTGTCCATGCATTCTTTCATCTTCACAA602GTTCGTTCAGGCACCATTTTGACTCGGTGTACC
KBrH111P04F Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH111P04, genomic survey sequence.
DU122343.1:120-139
CTTTGTCCATGCATTCTTTCATCTTCAGCA120GTTCGTTCAGGCACCATTTTGACTCGGTGTACCTCACAGAAAAGAGAGCC
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:15112031-15112050
CTTTGTCCATGCATTCTTTCATCTTCACAA15112031GTTCGTTCAGGCACCATTTTGACTCGGTGTACCTCACAGAAAAGAGAGCC
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:764358-764377
TCTCTTCCATGCATTCAAGAATCTTTACGA764358GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:807529-807548
TCTCTTCCATGCATTCAAGAATCTTTACGA807529GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:848519-848538
TCTCTTCCATGCATTCAAGAATCTTTACGA848519GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:915652-915671
TCACTTCCATGCATTCAAGAATCTTTACGA915652GTTCGTTCAGGCACCATTTTGAAGAAGTGTACTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:942600-942619
TCTTTTCCATGCATTCAAGAATCTTTACGA942600GTTCGTTCAGGCACCATTTTGAAGAACCGTAGTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:987079-987098
TCACTTCCATGCATTCAAGAATCTTTACGA987079GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141919.1:1024499-1024518
TCTTTTCCATGCATTCAAGAATCTTTACGA1024499GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATTTGGAGAGATGACAACG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:787505-787524
TCTTTTCCATCCATTCAAGAATCTTTACGA787505GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar Flame chromosome 10.
CP141936.1:805007-805026
TCTCTTCCATGCATTCAAGAATCTTTACGA805007GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:879936-879955
TCTCTTCCATGCATTCAAGAATCTTTACGA879936GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACCATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143367.1:979832-979851
TCTCTTCCATGCATTCAAGAATCTTTACGA979832GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1427855-1427874
TCACTTCCATGCATTCAAGAATCTTTATGA1427855GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1473199-1473218
TCTCTTGCATGCATTTAAGAATCGTTACGA1473199GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1487083-1487102
ATGATCTCATGCGTTCAAGAATCTTTACGA1487083GTTCGTTCAGGCACCATTTTGAAGAACCGTAGTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1514872-1514891
TCACTTCTATGCATTCAAGAATCTTTACGA1514872GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1538915-1538934
TCTCTTCCATGCATTCAAGAATCTTTACGA1538915GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1601124-1601143
TCTCTTCCATGCATTCAAGAATCTTTACGA1601124GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus hybrid cultivar cultivar SH6 chromosome 10.
CP143384.1:1638331-1638350
TCTTTTCCATGCATTCAAGAATCTTTACGA1638331GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:774109-774128
TCTTTTCCATGCATTCAAGAATCTTTACGA774109GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG
Malus sylvestris genome assembly, chromosome: 10.
OU696512.1:796134-796153
TCTCTTCCATGCATTCAAGAATCTTTACGA796134GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus domestica genome assembly, chromosome: 10.
OU696686.1:1019573-1019592
TCTTTTCCATGCATTCAAGAATCTTTACGA1019573GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG
Malus domestica genome assembly, chromosome: 10.
OU696686.1:1034361-1034380
TCTCTTCCATGCATTCAAGAATCTTTACGA1034361GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:1080920-1080939
TCTCTTCCATGCATTCAAGAATCTTTACGA1080920GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACCATG
Malus domestica genome assembly, chromosome: 10.
OU744551.1:1180811-1180830
TCTCTTCCATGCATTCAAGAATCTTTACGA1180811GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Malus domestica genome assembly, chromosome: 10.
OU744962.1:811537-811556
TCTTTTCCATGCATTCAAGAATCTTTACGA811537GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG
Malus domestica genome assembly, chromosome: 10.
OU744962.1:826325-826344
TCTCTTCCATGCATTCAAGAATCTTTACGA826325GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus domestica genome assembly, chromosome: 10.
OU745000.1:623566-623585
TCTTTTCCATGCATTCAAGAATCTTTACGA623566GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG
Malus domestica genome assembly, chromosome: 10.
OU745000.1:641068-641087
TCTCTTCCATGCATTCAAGAATCTTTACGA641068GTTCGTTCAGGCACCATTTTGAAGAAGCGTACTTTGGAGAGATGACAATG
Malus x robusta genome assembly, chromosome: 4.
OY720328.1:766923-766942
TCTTTTCCATGCATTCAAGAATCTTTACGA766923GTTCGTTCAGGCACCATTTTGAAGAAGCGTAGTTTGGAGAGATGACAATG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:1138244-1138263
TCTTTTCCATGCATTCAAGAATCTTTACGA1138244GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATTTGGAGAGATGACAACG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:1181521-1181540
TCTTTTCCATGCATTCAAGAATCTTTACGA1181521GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATTTGGAGAGATGACAACG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5283632-5283651
TCTCTTCCATGCATCCAAGAATCATTACAA5283632GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5524222-5524241
TCTCTTCCATGCATCCAAGAATCGTTACAA5524222GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Crataegus laevigata genome assembly, chromosome: 4.
OY756941.1:5673133-5673152
TCTCTTCCATGCATCCAAGAATCGTTACAA5673133GTTCGTTCAGGCACCATTTTGAAGAAGCGTAATCTGGAGAGATGACAACG
Mobula hypostoma genome assembly, chromosome: 16.
OY992608.1:51603294-51603313
ATAATGAAAATATGTAAGAGAAGTCTTGTT51603294AAAATGGTGCCTGAACGAACCACAATTAATATAGTGCATAAATATATTTT
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:57536563-57536582
GGCTCTCTTTTCTGTGAGGTACACCGAGTC57536563AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:7645087-7645106
CATTGTCATCTCTCCAAAGTACGCTTCTTC7645087AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAGAGA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141962.1:7662589-7662608
CATTGTCATCTCTCCAAACTACGCTTCTTC7662589AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAAAGA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:1144522-1144541
CGTTGTCATCTCTCCAGATTACGCTTCTTC1144522AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAGAGA
Malus hybrid cultivar cultivar Royalty chromosome 10.
CP141979.1:1244419-1244438
CATGGTCATCTCTCCAAACTACGCTTCTTC1244419AAAATGGTGCCTGAACGAACTCGTAAAGATTCTTGAATGCATGGAAGAGA
Brassica rapa subsp. pekinensis isolate BrTNL46 disease resistance protein gene, complete cds.
FJ842799.1:255-274
GGCTCTCTTTTCTGTGAGGTACACCGAGTC255AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG
Brassica napus genome assembly, chromosome: A09.
HG994363.1:41420119-41420138
GGCTCTCTTTTCTGTGAGGTACACCGAGTC41420119AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG
Brassica napus genome assembly, chromosome: C08.
HG994372.1:26694241-26694260
GGCTCTCTTTTCTGTGAGGTACACCGAGTC26694241AAAATGGTGCCTGAACGAACTTGTGAAGATGAAAGAATGCATGGACAAAG
Brassica rapa genome, scaffold: A09.
LR031568.1:45735606-45735625
GGCTCTCTTTTCTGTGAGGTACACCGAGTC45735606AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG
Brassica oleracea HDEM genome, scaffold: C8.
LR031879.1:35830316-35830335
GGCTCTCTTTTCTGTGAGGTACACCGAGTC35830316AAAATGGTGCCTGAACGAACTTGTGAAGATGAAAGAATGCATGGACAAAG
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:56196328-56196347
GGCTCTCTTTTCTGTGAGGTACACCGAGTC56196328AAAATGGTGCCTGAACGAACTGCTGAAGATGAAAGAATGCATGGACAAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTCGTTCAGGCACCATTTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTCGTTCAGGCACCATTTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.143 | 0.134 | search_plus_done; http://172.18.8.135:50400/match?q=GTTCGTTCAGGCACCATTTT&k=0&no_gap=0&offset=0&limit=50
0.218 | 0.075 | search_minus_done; http://172.18.8.135:50400/match?q=AAAATGGTGCCTGAACGAAC&k=0&no_gap=0&offset=0&limit=11
0.226 | 0.008 | cgi_end;

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