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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-03-14 21:52:02, GGGenome : DDBJ release 134.0 (Mar, 2024)

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検索語に色がつきます（ミスマッチ・挿入欠失）。

17ACDHMS_UP_005_E06_28JAN2004_040 Brassica napus 17ACDHMS Brassica napus cDNA 5', mRNA sequence.
CN726074.1:331-352
CTCTGTTTAGTGTGACAGAAAATAGTAGGA331GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
EL1839R Brassica embryo library (EL) Brassica napus cDNA clone EL1839 5', mRNA sequence.
CN826788.1:588-609
CTCTGTTTAGTGTGACAGAAAATAGTAGGA588GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
BNDH5DCT_UP_010_A07_16DEC2003_063 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
EE461458.1:594-615
CTCTGTTTAGTGTGACAGAAAATAGTAGGA594GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
BNSCS3CT_UP_089_H08_05MAY2007_050 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV043600.1:445-466
CTCTGTTTAGTGTGACAGAAAATAGTCGGA445GTTGGCCGGAAAATACCAAGTAATGTGATATATCTGATGCTGGATCCAAATG
BNSCS4CT_UP_130_H04_20MAY2007_018 Brassica napus BNSCS4CT Brassica napus cDNA 5', mRNA sequence.
EV068455.1:610-631
CTCTGTTTAGTGTGACAGAAAATAGTCGGA610GTTGGCCGGAAAATACCAAGTAATGTGATATATCTGATGCTGGATCCAAGTG
RR3AW05TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV550459.1:620-641
CTCTGTTTAGTGTGACGGAAAATAGTCAGA620GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATAGTC
BR069005 primary inflorescence cDNA library KBST Brassica rapa subsp. pekinensis cDNA clone KBST-05A06 5', mRNA sequence.
EX084361.1:525-546
CTCTGTTTAGTGTGACAGAAAATAGTCGGA525GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
BR085060 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-009B06 5', mRNA sequence.
EX098770.1:595-616
CTCTGTTTAGTGTGACAGAAAATAGTCGGA595GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
BR085796 root cDNA library KFRT Brassica rapa subsp. pekinensis cDNA clone KFRT-018H07 5', mRNA sequence.
EX099506.1:591-612
CTCTGTTTAGTGTGACAGAAAATAGTCGGA591GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
BR094507 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-026F06 5', mRNA sequence.
EX108217.1:593-614
CTCTGTTTAGTGTGACAGAAAATAGTCGGA593GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
BR102789 cotyledon cDNA library KHCT Brassica rapa subsp. pekinensis cDNA clone KHCT-20D07 5', mRNA sequence.
EX118959.1:552-573
CTCTGTTTAGTGTGACAGAAAATAGTCGGA552GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
RR1CS76TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EX749942.1:556-577
CTCTGTTTAGTGTGACGGAAAATAGTCAGA556GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATAGTC
RS1CK87TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence.
EX889775.1:583-604
CTCTGTTTAGTGTGACGGAAAATAGTCCGA583GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATACTC
RS2C294TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EX896147.1:601-622
CTCTGTTTAGTGTGACGGAAAATAGTCCGA601GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATACTC
RR1GH28TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
FD963622.1:596-617
CTCTGTTTAGTGTGACGGAAAATAGTCAGA596GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATAGTC
BN24DYSC_UP_069_E10_8FEB2008_072 BN24DYSC Brassica napus cDNA 5', mRNA sequence.
FG576620.1:594-615
CTCTGTTTAGTGTGACAGAAAATAGTAGGA594GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
Raphanus sativus mRNA, clone: RSCF04G24, 5' end sequence.
FY428926.1:280-301
CTCTGTTTAGTGTGACGGAAAATAGTCAGA280GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATAGTC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_1513.
FX712407.1:644-665
CTCTGTTTAGTGTGACAGAAAATAGTCGGA644GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_15814.
FX756989.1:694-715
CTCTGTTTAGTGTGACAGAAAATAGTCGGA694GTTGGCCGGAAAATACCAAGTAATGTGCGGTAGATCTGCAATAGTCTTTGAA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:5843936-5843957
CTCTGTTTAGTGTGACAGAAAATAGTCGGA5843936GTTGGCCGGAAAATACCAAGTAATGTGATATATCTGATGCTGGATCCAAATG
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:13664134-13664155
CTCTGTTTAGTGTGACGGAAAATAGTCAGA13664134GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATAGTC
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:13664134-13664155
CTCTGTTTAGTGTGACGGAAAATAGTCAGA13664134GTTGGCCGGAAAATACCAAGTAATGTGGCAGATCGGTAGATCTACAATAGTC
EL1839F Brassica embryo library (EL) Brassica napus cDNA clone EL1839 3', mRNA sequence.
CN826787.1:240-261
TTCAAAGACTATTGCAGATCTACCGCACAT240TACTTGGTATTTTCCGGCCAACTCCTACTATTTTCTGTCACACTAAACAGAG
BNARO4GH_T3_029_D09_25NOV2006_073 Brassica napus BNARO4GH Brassica napus cDNA 5', mRNA sequence.
ES905392.1:232-253
CATTTGGATCCAGCATCAGATATATCACAT232TACTTGGTATTTTCCGGCCAACTCCGACTATTTTCTGTCACACTAAACAGAG
BNZB_UP_198_C12_12MAR2006_092 Brassica napus BNZB Brassica napus cDNA 5', mRNA sequence.
ES968068.1:144-165
CATTTGGATCCAGCATCAGATATATCACAT144TACTTGGTATTTTCCGGCCAACTCCGACTATTTTCTGTCACACTAAACAGAG
RR3AW05JQ RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 3', mRNA sequence.
EV545755.1:154-175
GACTATTGTAGATCTACCGATCTGCCACAT154TACTTGGTATTTTCCGGCCAACTCTGACTATTTTCCGTCACACTAAACAGAG
RS2BE18JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW730583.1:183-204
GAGTATTGTAGATCTACCGATCTGCCACAT183TACTTGGTATTTTCCGGCCAACTCGGACTATTTTCCGTCACACTAAACAGAG
RS1CK87JQ RS1(AR) Raphanus sativus var. oleiformis cDNA 3', mRNA sequence.
EX893440.1:206-227
GAGTATTGTAGATCTACCGATCTGCCACAT206TACTTGGTATTTTCCGGCCAACTCGGACTATTTTCCGTCACACTAAACAGAG
RS2C294JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EX900117.1:200-221
GAGTATTGTAGATCTACCGATCTGCCACAT200TACTTGGTATTTTCCGGCCAACTCGGACTATTTTCCGTCACACTAAACAGAG
RR1GH28JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
FD959873.1:288-309
GACTATTGTAGATCTACCGATCTGCCACAT288TACTTGGTATTTTCCGGCCAACTCTGACTATTTTCCGTCACACTAAACAGAG
TSA: Raphanus sativus var. sativus RNA, contig: WG3_4354.
FX668726.1:128-149
GAGTATTGTAGATCTACCGATCTGCCACAT128TACTTGGTATTTTCCGGCCAACTCGGACTATTTTCCGTCACACTAAACAGAG
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_24804.
FX766552.1:594-615
GAGTATTGTAGATCTACCGATCTGCCACAT594TACTTGGTATTTTCCGGCCAACTCGGACTATTTTCCGTCACACTAAACAGAG
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:35264806-35264827
TTCAAAGACTATTGCAGATCTACCGCACAT35264806TACTTGGTATTTTCCGGCCAACTCCTACTATTTTCTGTCACACTAAACAGAG
Brassica napus genome assembly, chromosome: A02.
HG994356.1:29736579-29736600
TTCAAAGACTATTGCAGATCTACCGCACAT29736579TACTTGGTATTTTCCGGCCAACTCCTACTATTTTCTGTCACACTAAACAGAG
Brassica napus genome assembly, chromosome: C02.
HG994366.1:56629406-56629427
CATTTGGATCCAGCATCAGATATATCACAT56629406TACTTGGTATTTTCCGGCCAACTCCGACTATTTTCTGTCACACTAAACAGAG
Brassica rapa genome, scaffold: A02.
LR031573.1:27984648-27984669
TTCAAAGACTATTGCAGATCTACCGCACAT27984648TACTTGGTATTTTCCGGCCAACTCCGACTATTTTCTGTCACACTAAACAGAG
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:28915846-28915867
TTCAAAGACTATTGCAGATCTACCGCACAT28915846TACTTGGTATTTTCCGGCCAACTCCGACTATTTTCTGTCACACTAAACAGAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTGGCCGGAAAATACCAAGTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTGGCCGGAAAATACCAAGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.936 | 0.927 | search_plus_done; http://172.18.8.135:50400/match?q=GTTGGCCGGAAAATACCAAGTA&k=0&no_gap=0&offset=0&limit=50
1.377 | 0.442 | search_minus_done; http://172.18.8.135:50400/match?q=TACTTGGTATTTTCCGGCCAAC&k=0&no_gap=0&offset=0&limit=28
1.387 | 0.010 | cgi_end;

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