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ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-06 10:38:22, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Vigna unguiculata cultivar Xiabao 2 chromosome Vu08.
CP039351.1:33328830-33328849
TATGAAGGTTAAGATATACCTTTTGTTGCT33328830GTTTGAGGAAGGCTTGAGAGGACCGCATATGTCAGCATGCACTAGTTGTA
Parietaria judaica genome assembly, chromosome: 11.
OX940870.1:1418224-1418243
TATAAAGCTCAAGATATACCTCTTGTTGCT1418224GTTTGAGGAAGGCTTGAGAGGAATAAATATGTTAGCCTGCAATTGTTGTA
Diaphorina citri isolate DC chromosome 6.
CP125329.1:4960694-4960713
AATAAAGCGCAAACTGAGATGGAGAGATAA4960694GTTTGAGGAAGGCTTGAGAGAAAAGGGGTGGAGAAGAGAGGAGGTGTTAG
Sarcophilus harrisii genome assembly, chromosome: 3.
LR735556.1:241812117-241812136
GTCAGAAACCAGCATACTAGGATTGCTTTT241812117CTCTCAAGCCTTCCTCAAACTCTGCCCCTACTTCCTTAAATGTGGAGTAT
Erpetoichthys calabaricus genome assembly, chromosome: 7.
LR536438.2:140114797-140114816
GTAATGTACAGTTTGTGAATGAAAGGAACA140114797CTCTCAAGCCTTCCTCAAACTTGCCAAGATAATCAAGCTTATAGAAAAGG
Salmo trutta genome assembly, chromosome: 25.
LR584436.1:32662614-32662633
TTCCTCCCCCTCTTTTCTTTCATTGTCTTT32662614CTCTCAAGCCTTCCTCAAACCCACCCACCGCCTCCCCTCCCCAGGCCTGA
TSA: Cannabis sativa PK21770.1_1.CasaPuKu mRNA sequence.
JP449610.1:932-951
AATTAAGGAGTACCTTAAATTTCAACAAAG932CTCTCAAGCCTTCCTCAAACCAACTCTTGACTTAATAAGACTCAAATAAT
Lupinus angustifolius cultivar Tanjil voucher WA chromosome LG-16.
CP023128.1:20937759-20937778
TACAACTCGTGCATGCTGACATATGCGGTC20937759CTCTCAAGCCTTCCTCAAACAGCAACAAGAGGTATATCTTAAGCTTTATA
Sphenostylis stenocarpa genome assembly, chromosome: 3.
OY731400.1:64778878-64778897
AGAAAGGAACCACCATGAGCTTGATCTCAG64778878CTCTCAAGCCTTCCTCAAACTTCCTGCAAAGCCACTGTTATGAAGTTGTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTTGAGGAAGGCTTGAGAG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTGAGGAAGGCTTGAGAG | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.120 | 0.111 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGAGGAAGGCTTGAGAG&k=0&no_gap=0&offset=0&limit=50
0.165 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=CTCTCAAGCCTTCCTCAAAC&k=0&no_gap=0&offset=0&limit=47
0.169 | 0.004 | cgi_end;

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