GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-04 08:16:29, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Protomyctophum bolini genome assembly, chromosome: 15.
OZ001280.1:9090730-9090749
TGTGGCTCCTTTCCATTACAGAGCCCTGAT9090730GTTTGTTTTTGTTGTCGGCGCCTGTTGTTGTTTTTACTCAATGCGTCCAA
AUAC-aaf55c10.b1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED122497.1:210-229
CCTTATTTGTTTGTTCAAAGATGCTGGTCG210GTTTGTTTTTGTTGTCGGCGATGCGGGTACATTTCATAAGTTATGATGGT
AUAC-aae72a02.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED265786.1:549-568
CCTTGTTTGTTTGTTCAAAGATGCTGGTCG549GTTTGTTTTTGTTGTCGGCGATGCGGGTACATTTCATAAGTTATGATGGT
Trifolium pratense RNA for putative phosphoinositide specific phospholipase C, complete cds, clone: C1816.
AB236785.1:231-250
TCTTCTAAACCCAAAAAACAAACTTACAGC231GTTTGTTTTTGTTGTCGGCGCCGGTTTAAGCTCGGCGTATCGGAAGCGCC
Triticum monococcum genome assembly, chromosome: 2A.
OY737851.1:720358926-720358945
TTACAAACTAGACCAACATTTATAATTTGT720358926GTTTGTTTTTGTTGTCGGCGCTCAACACTCATTCAATCAATACAAGTAAA
Triticum monococcum genome assembly, chromosome: 2A.
OY737859.1:724231369-724231388
TTACAAATTAGACCAACATTTATAATTTGT724231369GTTTGTTTTTGTTGTCGGCGCTCAACACTCATTCAATCAATACAAGTAAA
Cordylochernes scorpioides isolate IN4F17 chromosome 14.
CP092876.1:44255354-44255373
GTCATCATCCCCTGATTTATGGCGCCGTTT44255354GTTTGTTTTTGTTGTCGGCGCGGTGCGTCATCCAGCAGGCTGGAATGGAG
Meconema thalassinum genome assembly, chromosome: X.
OX336389.2:655536494-655536513
CTTCGAATTTTCGATGAGGCATTGTGTATT655536494GTTTGTTTTTGTTGTCGGCGAGGGTGCAGCTGGGTTACAGCTTCATTCAA
Myopa testacea genome assembly, chromosome: 1.
OX451345.1:27468912-27468931
TTGTTGTTTGTTTTTGTTGTTGTTGTCTTT27468912GTTTGTTTTTGTTGTCGGCGGTGGTTATATTATACTCATAATTATTGTTG
Ostrinia nubilalis genome assembly, chromosome: 28.
OY979762.1:7535774-7535793
GTTACGTTACATGTAACATCATATATGGGT7535774GTTTGTTTTTGTTGTCGGCGTATTTAAATATTTCGAAATTATTTTTGCTC
AUAC-aao49g12.g1 Ascaris suum whole genome shotgun library (PMAJ_4 GSS) Ascaris suum genomic, genomic survey sequence.
ED227443.1:165-184
ACCATCATAACTTATGAAATGTACCCGCAT165CGCCGACAACAAAAACAAACCGACCAGCATCTTTGAACAAACAAACAAGG
Cordylochernes scorpioides isolate IN4F17 chromosome 02.
CP092864.1:161562075-161562094
CTCCATTCCAGCCTGCTGGATGACGCACCG161562075CGCCGACAACAAAAACAAACAAGCGGCGCCATAAATCAGGAGATGACGAC
Cheilosia impressa genome assembly, chromosome: 1.
OX411880.1:112207138-112207157
TAGTCCAACACACTAACCACTAAGCCACTG112207138CGCCGACAACAAAAACAAACCTGTTTCTAAAATGATTGATTAACGTAAAA
Dascillus cervinus genome assembly, chromosome: 2.
OX458317.1:27775530-27775549
AATCACCCTGTATACGCAATCCTTTTTTTG27775530CGCCGACAACAAAAACAAACAAGGGTAAATTCGTTATTTTTAAATGGTCA
Icerya purchasi genome assembly, chromosome: 2.
OX731681.1:280367679-280367698
GTTTTAATTAACTCTTTTATGACTACAGAA280367679CGCCGACAACAAAAACAAACTGAAAACACAACTGAAATTACGCAAACACA
Orthonevra nobilis genome assembly, chromosome: 1.
OY743224.1:99327121-99327140
TAAGCAAGCAAACAACAAGAGTCTATGGAA99327121CGCCGACAACAAAAACAAACAGTGATGTGAAGCACCGCATCCTGGGGATA
Tipula helvola genome assembly, chromosome: 3.
OY744483.1:333227813-333227832
AAATAATAAATAAATAAATAATTTAAATAC333227813CGCCGACAACAAAAACAAACCAGAGAAAAAAAAGTTTTTTTGTTGAGTTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GTTTGTTTTTGTTGTCGGCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GTTTGTTTTTGTTGTCGGCG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.148 | 0.139 | search_plus_done; http://172.18.8.135:50400/match?q=GTTTGTTTTTGTTGTCGGCG&k=0&no_gap=0&offset=0&limit=50
0.191 | 0.044 | search_minus_done; http://172.18.8.135:50400/match?q=CGCCGACAACAAAAACAAAC&k=0&no_gap=0&offset=0&limit=40
0.196 | 0.005 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).