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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-06 04:45:54, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BNARO1GH_T3_016_E04_22NOV2006_024 Brassica napus BNARO1GH Brassica napus cDNA 5', mRNA sequence.
ES900971.1:459-478
TTGGTTTGGTTCAAGATTTTAACCCGTTCT459TACCAGGACTGTATGGAGACCCACGGCTTTTCCGGTTTGGATGTTACGTA
KBrH003D20R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH003D20, genomic survey sequence.
CW979512.1:235-254
TTGGTTTGGTTCAAGATTTTAAACCGTTCT235TACCAGGACTGTATGGAGACCCAAGGCTTTTCCGGTTTGGATGTTACGTA
KBrH007A03R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH007A03, genomic survey sequence.
CW982167.1:234-253
TTGGTTTGGTTCAAGATTTTAAACCGTTCT234TACCAGGACTGTATGGAGACCCAAGGCTTTTCCGGTTTGGATGTTACGTA
Raphanus sativus DNA, clone: RSDH06A14_RP-2.
GA875023.1:297-316
TTGGTTTGGTTCAAGATTTTATCCCACTCT297TACCAGGACTGTATGGAGACCCATGGCTTTTCCTGTTTGGATGTTACGGA
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:59543523-59543542
TTGGTTTGGTTCAAGATTTTAACCCGTTCT59543523TACCAGGACTGTATGGAGACCCAAGGCTTTTCCGGTTTGGATGTTACGTA
Brassica napus genome assembly, chromosome: A10.
HG994364.1:13016991-13017010
TTGGTTTGGTTCAAGATTTTAACCCATTCT13016991TACCAGGACTGTATGGAGACCCATGACTTTTCCGGTTTGGATGTTACGGA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:51131757-51131776
TTGGTTTGGTTCAAGATTTTAACCCGTTCT51131757TACCAGGACTGTATGGAGACCCATGGCTTTTCCGGTTTGGATGTTACGGA
Brassica rapa genome, scaffold: A10.
LR031577.1:10005841-10005860
TTGGTTTGGTTCGAGATTTTAACCCGTTCT10005841TACCAGGACTGTATGGAGACCCATGGCTTTTCCGGTTTGGATGTTACGGA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:49288142-49288161
TTGGTTTGGTTCAAGATTTTAACCCGTTCT49288142TACCAGGACTGTATGGAGACCCATGGCTTTTCCGGTTTGGATGTTACGGA
Raphanus sativus genome assembly, chromosome: 5.
LR778314.1:17890428-17890447
TTGGTTTGGTTCAAGATTTTATCCCACTCT17890428TACCAGGACTGTATGGAGACCCATGGCTTTTCCTGTTTGGATGTTACGGA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:12762353-12762372
TTGGTTTGGTTCGAGATTTTAACCCGTTCT12762353TACCAGGACTGTATGGAGACCCATGGCTTTTCCGGTTTGGATGTTACGGA
KBrH094I16R Brassica rapa BAC library KBrH Brassica rapa genomic clone KBrH094I16, genomic survey sequence.
DU114442.1:253-272
TCCGTAACATCCAAACCGGAAAAGTCATGG253GTCTCCATACAGTCCTGGTAAGAACGGGTTAAAATCTTGAACCAAACCAA
KBrH066M07R KBrH (HindIII) BAC library Brassica rapa subsp. pekinensis Brassica rapa subsp. pekinensis genomic clone KBrH066M07, genomic survey sequence.
DU980073.1:136-155
TCCGTAACATCCAAACCGGAAAAGTCATGG136GTCTCCATACAGTCCTGGTAAGAACGGGTTAAAATCTTGAACCAAACCAA
SIL-034D1TR Sisymbrium irio BAC library SIL Sisymbrium irio genomic clone SIL-034D1, genomic survey sequence.
JJ763550.1:142-161
TCCGTAACATCCAAACCGGAAAAGCCGTGG142GTCTCCATACAGTCCTGGTAAGAACGGGTCATTATCTAAATATCTTGATT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH007A03, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
AC189559.2:133366-133385
TACGTAACATCCAAACCGGAAAAGCCTTGG133366GTCTCCATACAGTCCTGGTAAGAACGGTTTAAAATCTTGAACCAAACCAA
Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:5750318-5750337
TACGTAACATCCAAACCGGAAAAGCCTTGG5750318GTCTCCATACAGTCCTGGTAAGAACGGTTTAAAATCTTGAACCAAACCAA
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:7771899-7771918
TCCGTAACATCCAAACCGGAAAAGCCATGG7771899GTCTCCATACAGTCCTGGTAAGAACGGGTTAAAATCTCGAACCAAACCAA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:14277360-14277379
TCCGTAACATCCAAACCGGAAAAGCCATGG14277360GTCTCCATACAGTCCTGGTAAGAACGGGTTAAAATCTTGAACCAAACCAA
Brassica napus genome assembly, chromosome: A02.
HG994356.1:5444010-5444029
TACGTAACATCCAAACCGGAAAAGCCTTGG5444010GTCTCCATACAGTCCTGGTAAGAACGGTTTAAAATCTTGAACCAAACCAA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:7355120-7355139
TACGTAACATCCAAACCGGAAAAGCCTTGG7355120GTCTCCATACAGTCCTGGTAAGAACGGGTTAAAATCTTGAACCAAACCAA
Brassica rapa genome, scaffold: A02.
LR031573.1:5317907-5317926
TACGTAACATCCAAACCGGAAAAGCCTTGG5317907GTCTCCATACAGTCCTGGTAAGAACGGTTTAAAATCTTGAACCAAACCAA
Brassica oleracea HDEM genome, scaffold: C2.
LR031874.1:8751641-8751660
TACGTAACATCCAAACCGGAAAAGCCTTGG8751641GTCTCCATACAGTCCTGGTAAGAACGGGTTAAAATCTTGAACCAAACCAA
Raphanus sativus genome assembly, chromosome: 3.
LR778312.1:1895079-1895098
TCCGTAACATCCAAACCGGAAAGGCCATGG1895079GTCTCCATACAGTCCTGGTAAGAACGGGTCAAAATTTTGAACAAACCAGC
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:5487882-5487901
TACGTAACATCCAAACCGGAAAAGCCTTGG5487882GTCTCCATACAGTCCTGGTAAGAACGGTTTAAAATCTTGAACCAAACCAA
Raphanus sativus genome assembly, chromosome: 9.
OY743206.1:6113322-6113341
TCCGTAACATCCAAACCGGAAAGGCCATGG6113322GTCTCCATACAGTCCTGGTAAGAACGGGTCAAAATTTTGAACAAACCAGC
Raphanus sativus genome assembly, chromosome: 2.
OY743208.1:25727708-25727727
TCCGTAACATCCAAACAGGAAAAGCCATGG25727708GTCTCCATACAGTCCTGGTAAGAGTGGGATAAAATCTTGAACCAAACCAA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/TACCAGGACTGTATGGAGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : TACCAGGACTGTATGGAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.300 | 0.292 | search_plus_done; http://172.18.8.135:50400/match?q=TACCAGGACTGTATGGAGAC&k=0&no_gap=0&offset=0&limit=50
0.505 | 0.205 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTCCATACAGTCCTGGTA&k=0&no_gap=0&offset=0&limit=39
0.515 | 0.010 | cgi_end;

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